KEGG   Argentina anserina (silverweed cinquefoil): 126787892
Entry
126787892         CDS       T10558                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
aans  Argentina anserina (silverweed cinquefoil)
Pathway
aans03013  Nucleocytoplasmic transport
aans03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aans00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126787892
  09122 Translation
   03013 Nucleocytoplasmic transport
    126787892
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aans03019]
    126787892
   03041 Spliceosome [BR:aans03041]
    126787892
Messenger RNA biogenesis [BR:aans03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     126787892
Spliceosome [BR:aans03041]
 Complex C
  Other components
   EJC/TREX
    126787892
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    126787892
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_WDR75_1st eIF2A Beta-prop_TEP1_C Beta-prop_EML Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st WD40_RFWD3 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Tricorn_2nd Beta-prop_IFT122_2nd B-prop_COPA_B_2nd Beta-prop_IFT80_2nd Beta-prop_DCAF12 WDR90_beta-prop_4th Beta-prop_ELP1_1st Beta-prop_ACSF4 Beta-prop_WDR41 DUF7099 Beta-prop_VPS8 Beta-prop_WDR11_1st PROPPIN WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 126787892
NCBI-ProteinID: XP_050369765
LinkDB
Position
3:32794678..32797745
AA seq 314 aa
MEEPVTFKNLSSREYHGHEKKVHSVAWNCAGTKLASGSVDQTARIWHVEPHGHSKAKGVE
LKGHTDSVDQLCWDPKHADLVATASGDKTVRLWDARTGKCAQLAELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTTSDIFFLTTGNGTVEVLSYPSL
KPVDTLMAHTAGCYCIAIDPCGRYFAVGSADSLVSLWDISEMLCVRTFTKLESPVRTISF
NHTGEYLACASEDWFIDIANVQTGRTVHQIPCRAAMNSVEWNPKGNLLAYAGDDKVKPPG
EGIFRIFGFKSSSS
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaggagcccgtaacgttcaagaacctcagcagccgagagtaccacggccacgagaag
aaggtccactctgtcgcttggaactgcgccggcaccaagctcgcttcgggctccgtcgat
caaacggcccggatttggcacgttgagccccacgggcacagtaaggccaaaggtgtggaa
ttgaagggtcacacggatagtgtggatcagctgtgctgggaccctaagcatgctgatttg
gttgccactgcctccggggacaagaccgttcggctttgggatgctcgcaccgggaagtgt
gcgcagctagcggagctgagtggggagaatattaacattacttataagcccgatgggacg
cacattgcggttggtaatagggacgatgaactgacgattttggatgttcggaaattcaag
ccaattcacaagaggaagttcaattatgaggttaatgaaattgcttggaacacaacaagt
gatattttctttctgacaactggaaatggtactgttgaagtactatcatacccatctctt
aagccagttgatactctcatggctcatacagctggttgctattgcattgcaattgatcca
tgtggaagatattttgctgttgggagtgctgattccctggtcagcctgtgggatatctca
gagatgctctgtgtgcgaacgtttacaaagcttgaatcgcctgtgagaacaataagcttt
aaccacactggagagtatcttgcttgtgccagtgaagactggtttattgatattgcaaat
gttcaaactgggcggacggtgcatcaaattccatgtagggctgccatgaatagtgtggaa
tggaatccaaaaggcaatctacttgcatatgccggggatgacaaagtcaaaccccctggt
gaaggtatctttaggatatttggtttcaaaagtagctcgagctag

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