Argentina anserina (silverweed cinquefoil): 126789051
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Entry
126789051 CDS
T10558
Name
(RefSeq) uncharacterized protein LOC126789051
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126789051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126789051
03041 Spliceosome [BR:
aans03041
]
126789051
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126789051
Spliceosome [BR:
aans03041
]
Complex B
Other components
Prp19-related factors
126789051
Complex C
126789051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
DUF5575_C
Motif
Other DBs
NCBI-GeneID:
126789051
NCBI-ProteinID:
XP_050371065
LinkDB
All DBs
Position
3:1832033..1836914
Genome browser
AA seq
916 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPYSLKLWWRYLIARSDAPFKKRRTIYERAVKALPGSY
KLWHAYLRERLELVRSFPISHSEYETLNNTFERALVTMHKMPRIWILYLQSLTEQRLVTK
TRRTFDRALCALPVQQHDRIWELYLVFVSQKGMPIQTSLRVYRRYLLYDPTHVEDFIAFL
IDSELWQEAAERLASVLNDDRFRSIKGKTKHRLWLELCDLLTKNATAVSGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIKRSLFEKARDVFEEGMQTVVTVRDFSVIFDAYAQFEESML
AIKMEALGSDEEEEEDEGRMEDDGSEEEEEDVRTNVDLSVAELERKILHGFWLHDENDVD
LRLARLDHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTQAVKTVDPM
QAVGKPHTLWVSFAKLYETHGDIANARVIFDKAVQVNYKTVDNLASLWCEWAEMELRHKN
FKRALELMSRATAEPSVEVKRRVAADGNQPVQIKLHKSLRLWTFYVDLEESLGTLESTRA
VYERILDLRIATPQIIINYALLLEEHKYFEDAFKVYEKGTQIFKYPHVKDIWITYLSKFV
KRYGKTKLERARLLFEDAVKAAPADAKKPLYLQFAKLEEDYGLAKRAMHVYDEATKAVPN
HEKLSMYEIYIARAAEIFGIPQTRAIYEQAIESGLPDKDVKPMCLKFAELEKSLGEIDRA
RQIYIFASQFSDPRSDAEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYTQTHFILPEY
AMQKDQRLSIDEAKDKLKQAGVPEDEMAALERQLAPVISDTPSKDSNRKVGFVSAGTESQ
TDEGIKVTANHEDIELPEESDSEDEANVEIAQKEVPAAVFGDLANKRKDIEDDEGGNKDG
ESPLGALERIKRLRKG
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcgatctctcaagaactctacccctcccaagacgacctcctctacgaagaagagctt
ctccgaaacccttacagcctcaagctctggtggcgctacctaatcgcccgctccgacgct
cccttcaagaagcgccgcaccatctacgaacgcgccgtcaaggccctccccggaagctac
aagctctggcacgcctacctccgcgagcgcctcgagctcgtccgcagcttccccatctcc
cactccgagtacgaaaccctaaacaacaccttcgaaagggccctggtcacgatgcacaag
atgccgcggatctggatcctctacctccagagcctcactgagcagaggctggtgacgaag
acgcggcggaccttcgaccgcgcgctgtgtgctctgccggtgcagcagcacgaccggatt
tgggagctctatctggtgttcgtgagccagaaggggatgccgatccagacctcgcttcgg
gtctacaggaggtacttgctttacgatcccactcatgttgaggatttcattgcgtttttg
attgactctgagctgtggcaagaggcggcggagcggttagcctcggtgctgaatgatgat
cggtttaggtcgattaaggggaagacgaagcataggttgtggttggagttgtgtgatttg
cttactaagaatgcgacggccgtgtcggggctgaatgtggatgcgattattaggggaggg
attaagaagtttacggatgaggtggggcggctgtggacgtcgctggcggattattatatc
aagaggagcttgtttgagaaggcgagggacgtgtttgaggaggggatgcagactgtggtg
actgttagggattttagtgtgattttcgacgcgtatgcgcagtttgaggagagtatgctt
gccattaagatggaggcgttaggaagtgatgaggaggaggaggaggatgaggggagaatg
gaagacgatggaagcgaagaggaggaggaagatgttaggacaaatgtagacttgtcggtg
gctgagctcgagaggaaaatactccatgggttttggctgcatgatgagaatgatgttgat
ctgaggctggcgagattggaccatcttatggatagaagacctgaactggctaatagtgta
ttgttgagacaaaatccgcataatgtagagcaatggcaccggagagtgaagctctttgag
ggcaatccgacgaagcagatacttacgtatacccaggctgtgaagacagtggatccaatg
caagcagtggggaagcctcatacgttgtgggtttcttttgctaagctgtatgaaacacac
ggagatattgcaaatgcgagagtgatttttgataaggccgtccaggtcaactacaagacg
gtggacaatctggctagtctatggtgtgagtgggcagaaatggaattgcggcataagaac
tttaaacgtgccctggaattgatgagtagagctacagcagagccatctgttgaggtcaaa
cgaagagttgctgctgatgggaatcaaccagttcagattaagctccataaatccttgagg
ctttggaccttttacgtggatctggaggagagcttaggtacactagagtctacgagggca
gtgtatgaaaggattctagatttgagaatagccacacctcaaattataatcaactatgcg
ttgcttcttgaagaacataaatattttgaagatgcattcaaagtttatgaaaagggtact
caaatattcaagtatccgcatgtcaaagacatatggattacatatctctccaaatttgta
aaaagatacgggaagactaagctggaacgtgcaagattgctttttgaggatgctgttaaa
gcggctcctgctgatgcgaagaaacctttatatcttcaatttgcaaagctggaggaggat
tatggtttagcaaagcgggctatgcatgtgtatgatgaagcaaccaaggctgttccgaac
catgaaaagttgagcatgtatgaaatttacattgcccgtgcagctgagatctttgggatc
ccccaaacaagggccatatatgagcaagcaatagaatctggtctccctgacaaagatgtg
aagccaatgtgcttaaagtttgctgagcttgaaaagagcttgggcgaaattgatcgtgct
cggcaaatttatatatttgcatcacagttttccgatccgcgatcagatgcagaattctgg
aacaaatggcacgagtttgaggtgcaacacgggaatgaagatacatttagagaaatgctt
cgaatcaaacgaagtgtttctgcaagctatactcagacacactttattctacccgagtac
gcgatgcaaaaggatcagaggttgagcattgatgaggcaaaagacaaattgaaacaggct
ggagtccctgaagatgaaatggctgctcttgagaggcagttggctcctgtgatcagcgat
acgccctcgaaagacagcaacaggaaagtgggctttgtgagtgctggaacagaatcacag
actgatgaagggataaaagttactgcaaatcacgaggacatagaactaccagaagaaagt
gattctgaagacgaggcgaatgttgaaattgcacaaaaagaggtccctgctgctgttttc
ggggatttggctaacaagagaaaggatattgaagatgatgagggcggaaacaaggacggt
gagagcccccttggtgcgcttgagagaataaagaggctaagaaaagggtga
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