Argentina anserina (silverweed cinquefoil): 126790090
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Entry
126790090 CDS
T10558
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126790090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aans03021
]
126790090
03019 Messenger RNA biogenesis [BR:
aans03019
]
126790090
Transcription machinery [BR:
aans03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126790090
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126790090
U7-dependent histone pre-mRNA processing factors
126790090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
126790090
NCBI-ProteinID:
XP_050372179
LinkDB
All DBs
Position
4:complement(5372588..5376467)
Genome browser
AA seq
693 aa
AA seq
DB search
MASTTTAGIKRREVSSSSTAKEEDKLIVTPLGGGSEVGRSCVHMSYKGKTVLFDCGIHPA
FSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYHLL
LKDYVKVSKFSVEDMLFDEKDINASMDKIEVIDFHQTVEVGGIRFWCYTAGHVLGAAMFM
VDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDVCIIESTYGVQHHQPRNVREKRFTEAI
HTAISRGGRVLIPAFALGRAQELLLILDEYWSSHPELHNIPIYYASPLAKKCLSVYETYT
LSMNDRIRNAKSNPFIFKHISPLKSIENFKDVGPSVVMASPGTLQSGLSRQLFDLWCSDK
RNACVIPGYVIEGTLAKTIINEPKEVTLTNGLAAPLNMSIHYISFSAHADSVQTSAFLEE
LRPPNIILVHGESHEMARLKDKLLTQFRDRSTRILTPKNCQSVEMQFSSQKMAKAIGRIA
DRTPEVGEKVSGLLVKKGFSYQIMASEDLHVFSQLSTANVTQRITIPYATGFMVINHRLR
RIYESVESSVDEESGVPTLKVHDRVTLRQDTDKHVSLHWISDPISDMVCDSIVALILAIN
RELPKVVDESGDINHEEENARTERVIHALLTSLFGDVQRGDNGKLVISVDGNVAQLNKQT
GEVESENEGLKERVKTAFRRIQIAVRPIPLSAT
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgacgacgacggcggggataaagcggcgcgaggtctcttcctcgtcgacggct
aaagaggaagacaagctcatcgtgactccattaggcggcggaagcgaagtcggccgctct
tgcgttcacatgtcctacaagggcaaaaccgtcttgttcgactgcggcatccacccggcc
ttctccggcatggccgctttgccctatttcgatgagattgatccctccaccatcgatgtc
cttctcataacgcattttcacttggatcatgctgcatccctgccttacttccttgagaag
accacattcaagggccgagtctttatgacatatgcaaccaaagctatctaccacttgctt
ttgaaagattatgtgaaagtcagcaaattttcagttgaagatatgctgttcgatgagaag
gacataaatgcttctatggacaaaattgaggttattgatttccaccaaacagtagaagtt
gggggcatccggttttggtgctacactgcaggtcatgtccttggtgctgctatgtttatg
gttgatattgccggtgttagggtcctctacactggagattactcacgtgaagaagatcga
cacctccgtgctgctgagatcccgcagttctcccctgatgtatgcattatcgagtccaca
tatggtgtccagcaccatcaacctcgaaatgtccgagagaagcgcttcactgaagctata
cacacagccatctctcgaggtggtcgtgtcttaatacctgcatttgcacttggccgtgcc
caagaacttctcctgattcttgacgagtattggtccagtcatccggagctccataacatt
cctatatattatgcttcaccactggcaaagaaatgtctgtctgtttatgagacgtacact
ctctcaatgaatgataggatccgcaatgccaagtcaaatccttttatcttcaagcacata
tcaccactaaagagcattgagaatttcaaagatgtaggcccctcagttgtgatggcaagc
cctggtactcttcaaagtgggttgtcaaggcagctttttgatttgtggtgttctgataag
agaaatgcatgtgtgattccaggttatgtgattgaggggacacttgctaagacaatcatc
aatgaaccgaaggaggttacccttactaatgggcttgccgctcctctcaacatgtcaatc
cattacatttcattctctgctcatgcagactctgttcagacaagtgcctttctggaggaa
ctgaggcctccaaacatcattcttgtgcatggagaatctcatgagatggcaaggttaaaa
gacaaactactgacgcaatttcgtgatcgcagtaccagaatactaacacccaagaattgt
caatctgtggaaatgcaattcagctcgcagaaaatggcgaaagccattggaaggattgct
gatagaaccccagaagttggtgaaaaagttagtggcttactggtaaaaaaaggttttagt
tatcagataatggcctccgaggatcttcatgttttctcacagctgtccacggcaaatgtc
actcagcgtattactatcccgtacgctactggcttcatggtgataaatcatcggctgagg
cgaatatatgagagtgtagaatcttctgtggatgaggaatctggagtaccaacgttgaaa
gtgcatgatcgcgtgacactgaggcaggatacagataagcatgtatcacttcattggata
tcagatccgatcagtgacatggtgtgtgactcgattgtggctctaattttggctatcaac
cgagaactccccaaggtagttgatgaatcgggtgacataaaccatgaggaggagaatgct
aggacggaaagggtcattcacgcacttcttacctcgctctttggggatgtgcagcgtgga
gataacgggaaattggtgatcagtgttgatggaaatgtggcacagctcaataaacaaact
ggggaagttgagagtgaaaatgaaggcctcaaggaaagagtaaagacagcatttcgtcga
atccaaattgcggtgaggccaattcctctctctgcaacatag
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