Argentina anserina (silverweed cinquefoil): 126790758
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Entry
126790758 CDS
T10558
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126790758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126790758
03041 Spliceosome [BR:
aans03041
]
126790758
03009 Ribosome biogenesis [BR:
aans03009
]
126790758
03016 Transfer RNA biogenesis [BR:
aans03016
]
126790758
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126790758
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126790758
Spliceosome [BR:
aans03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126790758
Complex C
U4/U6.U5 tri-SnRNP related factors
126790758
Ribosome biogenesis [BR:
aans03009
]
Eukaryotic type
Pre-60S particles
Helicases
126790758
Transfer RNA biogenesis [BR:
aans03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126790758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126790758
NCBI-ProteinID:
XP_050373059
LinkDB
All DBs
Position
4:4602097..4609627
Genome browser
AA seq
989 aa
AA seq
DB search
MEDESQQTLGKRKEPEPSETAPNPNDASPLKRRNFTRTCLHEVAVPAGYSPTKDESLHGT
LSSPSYEGPMAKSYKFDLDPFQKISVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK
QRVIYTSPVKALSNQKYREFNQEFGDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIIFMPPAVKMVFLSATMSNATEFAEWICNVHKQ
PCHVVYTDFRPTPLRHYIFPVGGTGLHLVVDEHEEFNEGSFMKVQESFSKQKVGDGQRSA
NGRAGGRIGKGGNAGSGGSDIYKIVKMIMEQKFQPVIIFSFSRRECEQHAISMAKLDFNS
QEEKDVVEEVFRNAIQCLNEEDRELPAVELILPLLLRGIAVHHSGLLPVIKELVELLFQE
GLVKALFATETFAMGINMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDEQG
ICIIMIDEQMEMNILKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQ
FQHEKALPDIGKKVSQLEQEAEMLDSSGEAEVAEYDKIKLDIAQLEKKMMSEIMRPERVL
MFLLTGRLVKIREGGTDWGWGVVVNVVKKPSSGASSRGGGYIVDTLLHCSPGSSENSLQP
KPCPPRPGEKGEMHVVPVQLPLISSLSKLRINVPSDLRPLEARQSILLAVQELGERFPQG
LPKLNPVKDMGIQDLQIVELVSQIEALEQRLYAHPLHKSQDVHQIKCFQRKAEVNHEIQQ
LKSKMRESQLQKFRDELKNRSRVLKKLGHINSEGVVQLKGRAACLIDTGDELLVTELMFN
GTFNDLDHHQIAALASCFIQQDRSNEQIHLRSELARPLQQLQESARRIAEIQNECKLETD
VDEYVESTVRPFLMDVIYCWSKGASFADVIQMTEIFEGSIIRSARRLDEFLNQLRTAANA
VGEVELEKKFEAASESLRRGIMFANSLYL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgaatcccaacaaaccctaggaaagcgaaaagagccagagccttccgaaaca
gcccctaaccctaacgacgcctcaccgctgaagcgccgcaacttcacccgaacatgcctc
cacgaggtcgccgtccccgccggctactctccgaccaaggacgagtccctccacggcacc
ctctcaagcccctcctacgaaggccccatggccaagtcctacaagttcgacctcgatccc
ttccagaagatctccgtcgcgtgcctcgagcgcaacgagtcggtgctcgtctcggcgcac
acgtcggccggaaagaccgcggtggcggagtacgcgatcgcgatggcgttccgggacaag
cagagggtgatctacacctccccggtgaaggccttgagtaatcagaagtacagagagttc
aatcaggagtttggcgacgtcggactgatgaccggagacgtgacgatttcgccgaacgcc
agctgtctagttatgactactgagattctgaggggaatgctgtacaggggatcagaggtt
ttgaaggaagttgcttgggtgattttcgacgagatacattacatgaaggatagggagaga
ggtgtagtgtgggaggagagcattatattcatgccgccggcggttaagatggtgtttctt
tcggccacaatgtcgaatgccaccgagtttgcagagtggatttgcaatgtgcacaagcag
ccgtgtcatgtggtgtacacggattttaggccgacgccattgaggcattatatatttccg
gtgggtgggacggggttgcatcttgtggtggatgagcatgaagagtttaatgaggggagt
tttatgaaggttcaggagagtttctcgaagcagaaagttggggatgggcagaggagtgca
aatgggagggcgggtgggagaattggaaaaggtgggaatgctggttctggtggttctgat
atatacaaaattgtgaagatgattatggaacagaaatttcagccagttataattttcagc
ttcagtagaagagaatgtgaacaacatgcaatctccatggccaagcttgactttaactcc
caagaggaaaaagatgttgtcgaagaggtttttcgaaatgcaatacagtgcttaaatgag
gaagacagagagttgcctgctgttgagttaattttgccactccttctgcgaggcattgct
gttcatcattctggccttcttcctgttatcaaggaattggtagaactccttttccaggag
ggccttgtaaaagccctctttgctactgagacgtttgcaatgggtataaacatgccagca
aaaactgttgttttcacagctgtaaaaaagtgggatggtgatagtcatcggtatattggc
tctggggagtatatccaaatgagcggtagggctggacgtcgtggcaaagatgagcaaggt
atttgtatcataatgattgatgaacagatggaaatgaacatacttaaggacatggtgttg
ggtaaaccagctcctttagtgagtactttcagactcagctactattccattttgaatttg
ctgagtcgtgcggaaggccaattcacagctgaacacgtgataaagaattccttccaccaa
ttccagcatgaaaaggccttacctgatatagggaagaaggtttcacagcttgaacaggaa
gcagaaatgcttgattcatcaggagaggccgaagttgcagagtatgataagataaaactt
gatatagcccaacttgagaagaaaatgatgtcagagataatgaggcctgaaagagtttta
atgtttcttcttactggtcgcttggttaagataagggaaggtggaacagattggggttgg
ggagttgtagttaatgttgttaaaaagccatcatcaggagcttcttcacgtggcggtggt
tatatagtagatactttgcttcactgttctcccggttcaagtgagaacagtttacagcca
aaaccatgcccccctcgtcctggagagaagggtgaaatgcatgtagtccctgttcagttg
ccattgatatcttctctaagcaaactccggataaatgttccttctgatttgcggccactg
gaggcaaggcaaagtattcttcttgctgtgcaggaacttggagaacgttttccacaaggt
cttccgaagctgaatcctgtaaaggatatgggcattcaggatctgcaaattgttgagctg
gtcagtcaaatagaagcactggaacagagattatatgcacacccactgcataagtctcaa
gatgttcatcagattaaatgtttccaaaggaaagcagaggtgaatcatgaaattcaacaa
cttaagtccaaaatgcgtgaatcacagcttcaaaaatttcgtgatgaacttaagaaccgt
tcaagggtcttgaagaagcttggtcatattaattccgagggtgttgttcagttaaagggg
cgggcagcctgcttgatagacactggagatgaacttcttgttactgaactgatgtttaat
ggtacattcaacgatttagatcatcatcagattgcagctctagcaagttgctttattcag
caagatagatcaaatgagcagatacacttgaggtcagagcttgcaaggccattacaacaa
ctccaagagagtgcaagaagaatagcagagatacaaaatgaatgcaaattagaaacagat
gtagacgagtatgtggaatcaacagtgaggccattcttgatggatgtgatttattgttgg
tcaaagggtgcaagttttgcagatgttatacaaatgacagaaatatttgagggcagcatc
attagatctgctagaagacttgatgaatttttgaaccagttgcgtactgctgctaatgct
gttggagaagttgagttggagaagaaatttgaagcagctagtgaaagccttcgccgaggt
atcatgtttgcaaattcactatatctgtag
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