Argentina anserina (silverweed cinquefoil): 126792582
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Entry
126792582 CDS
T10558
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126792582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126792582
03012 Translation factors [BR:
aans03012
]
126792582
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126792582
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126792582
Translation factors [BR:
aans03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126792582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
NACHT
AAA_19
ATPase
NPHP3_N
AAA_11
ATPase_2
T2SSE
RsgA_GTPase
ResIII
ABC_tran
AAA_14
AAA_16
Motif
Other DBs
NCBI-GeneID:
126792582
NCBI-ProteinID:
XP_050374946
LinkDB
All DBs
Position
4:complement(22195484..22204080)
Genome browser
AA seq
1181 aa
AA seq
DB search
MLTSSPSPQSHLPPPSSASALRPSPPSSLPLAAMKDRPPSSYGAVYVPPHHRLRSVITAP
NYTSAASMTTAAAASLSKARAYYQTQPQELLHKPKLQNGSAYGADNNPGASVSDNIDEWK
RKLTMLLSDNKKQELITREKKNRRDFEEIAVLLASRMGLYSYLYAKFAVFSKVPLPNYRF
DLDDRKPQXEVTLPLGLLRRVEAYLGDFLSQKSRTIEICPDISFSRSSSIGTDEGLFEQP
EPVLSNNAAMEKVLWRRSLQLRDKQQAWQESREGRKVMELRRTSLPAYQEKDALLTAISQ
NQFVVISGQTGCGKTTQISQFILESEIEAGRGAVCSIICTQPRRISAMSVSERVASEREE
KLGDSVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDGNLKDVTHVIVDEIHERGMNEDF
LLIVLKDLLPRQPELRLVLMSATLDAELFSSYFDRAQIIHVSGFTYPVRTHFLEDVLEST
GCRLTPYNQIDDYGQEKMWKMNKQAPRKRKSQIASVVEDALKAADFKGYSPQTQESLACW
NPDCIGFNLIDYILCNICENERPGAILVFMTGWDDINSLKEKLHANPLLGDPSRVLLLAC
HGSMASSEQRLIFDEPEDGVRKIVLATNIAETSITIIDVVFVLDCGKAKETSYDALNNTP
CLLPSWISKVFAQQRRGRAGRVQPAECYRLYPRCVYDAFAEYQLPEXLRTPLQSLCLQIK
SLKLRSISDFLSRALQSPELLAVKNAIEYLKIIGALDENENLTILGHYLTVLPVEPKLGK
MLLLGAIFNCLDPVLTIVSGLSVRDPFLMPFDKKDLVEAAKSQFFQDHSDHIALVRAYED
WRVAERDFAGYDYCWKNFLSAQSMKAIDSLRKEFLSLLRDADLIDSNTATYNVWSYDEHL
VRAVICYGLYPGICSVMHNEKSCSLKTMEDGQVLLYSHSVNARESKIPYPWLVFNDKIKV
NSVFLRDSTAVSDSVLLLFGGTFSKGDIDGHLKMLGGYLEFFMKPAVAEMYQCLRAELDE
LIQTKLRNPRMAIHKYHELLSAVRLLLSQDIGEGRFVFGRQVRTSLKPSVGAAQAGLVSR
TESGPGGDNSKSQLQTLLTRAGYAAPGYKTKQLKNCKFQSSVEFNGMQIMGQPCNNKSAE
XDAAAEAIQXLVSGTQMGHEHIYHMSMMLKKKQKRIIMELQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgctcacctcatccccttctccacagtcacacctccctccgccttcctccgcctccgcc
ctgagaccctcaccaccgtcgtctctcccgctcgccgccatgaaggaccgccctccttct
tcctacggcgccgtctacgtccctccccaccaccgcctccgctccgtcatcaccgcccct
aattacacctccgccgcctccatgacgactgctgctgccgcttctctcagcaaagctcgc
gcctactaccagactcagccgcaggaactcctccacaagccgaagctgcagaacggctct
gcttacggcgccgacaacaatccgggtgcttcagtctctgataacattgatgagtggaaa
cggaagctaaccatgctgttaagtgacaacaagaagcaagagttaattacaagggagaaa
aaaaacagacgtgattttgaggaaatagctgtgttgttggcaagcagaatgggactttac
agctatctgtatgcaaaattcgctgtatttagtaaggtccccttgccaaactacagattt
gatctcgatgaccggaaacctcagtgagaggtgaccttgccacttgggttgctgaggagg
gttgaggcctaccttggagacttcctttctcagaagtctaggacgatagaaatctgtcca
gatatatccttttctagatcaagcagtattggtactgatgaaggactctttgagcaacct
gaaccagtgttatctaataatgctgcaatggaaaaagttctttggaggagaagcttgcag
ctgcgggataagcaacaagcttggcaggaatctcgtgaaggcagaaaagttatggaactc
cgtcgaacttccctcccagcttatcaagagaaggatgctttgttgacagcaatttcacaa
aatcagtttgttgtcatatcggggcaaactggttgcggaaagaccacacaaatttcacaa
tttattttggaatctgagatagaagctggccgtggggctgtttgtagtatcatatgtaca
cagcctaggagaatatctgctatgtcagtttctgaaagagttgcttcagagagagaagag
aagctgggtgattcagttggatataaggttcggttagagggtatgaaaggaagagacaca
cgccttctgttctgtactactggtattttgttgagaagattgctagttgacggaaatttg
aaagacgtgactcatgtcattgttgatgagattcatgaacgtggaatgaatgaagatttt
ctgcttattgttctcaaggatctccttcctcgccagccagaactgaggttggttctgatg
agtgcaaccctagatgctgagcttttctcatcctacttcgatagggctcagataattcat
gtttcgggttttacatatcctgttcgaactcattttctggaggatgttctggaaagtaca
ggttgcaggttaactccctacaatcagattgatgattatggtcaagaaaagatgtggaaa
atgaataaacaagcaccaagaaagaggaaaagtcaaattgcttctgttgttgaggatgca
ctcaaagcagctgattttaaaggttacagtccccagactcaggaatctctagcctgttgg
aatcctgattgtatcggttttaacctcatagattatatcttatgcaatatctgtgagaat
gaaaggccgggagccattctagttttcatgactgggtgggatgacataaattctttaaag
gaaaagttgcatgcaaatcctctcttaggtgatccaagccgagtcttgttgttagcatgt
catggttccatggcgagttctgagcagaggttgatatttgatgagcctgaagatggagtg
aggaaaatagtgttggccactaatattgctgaaacgagtatcacaatcattgatgttgtt
tttgttcttgattgtggaaaggcaaaagagacttcatatgatgcactgaataatactcct
tgtttgcttccttcctggatatccaaggttttcgctcaacaaagaagaggaagagctggg
cgcgttcaacctgcggaatgttaccgtctctatcctagatgtgtttatgatgcatttgca
gaatatcagttgccggaannattgaggacacctctgcagtctctttgtctgcaaatcaaa
agtttaaaactcagaagtatttcagatttcttatctagggctctacagtcaccagagtta
cttgcggtgaaaaatgccatagagtatttaaagatcattggggccttggatgagaacgag
aatctgactattttaggacactatctaactgtgctgccagtggagccaaaacttggaaaa
atgctcttgctaggtgccatcttcaactgcctggatcctgttttgactattgtttctggc
cttagtgtcagagatcctttcttaatgccgtttgacaagaaagatcttgtggaggctgca
aaatctcaatttttccaagaccacagtgatcacattgcacttgtgcgtgcatatgaggat
tggagagtagctgaaagagactttgctggatatgactactgctggaaaaattttctttca
gcacaatcgatgaaagctattgattctcttaggaaggagttcctctctttgttaagggat
gctgatcttattgattccaacacagctacctataatgtatggagctatgatgagcatctt
gtccgtgctgttatttgctatggcctatatcctggaatttgctctgttatgcacaatgag
aagtcatgttcactgaaaactatggaagatggtcaggtgctgctatactcgcactctgta
aatgcccgggaatctaaaattccatatccttggctggttttcaatgacaagataaaggtg
aactctgtttttctacgggattcaacagctgtgtctgattcggtgctcctcttgtttggt
ggaactttttcaaaaggggatattgatggacacttgaaaatgttgggaggatacttggaa
ttcttcatgaaacctgctgtagcagaaatgtatcaatgtttaagggcggaacttgatgaa
ttaattcagacaaaactacggaacccaaggatggccatccacaaatatcatgaactcctt
tctgcagtgcgtttgctgctctcccaggatataggtgagggtagatttgtatttggtcgc
caggtccgtacatccttaaagccatctgtgggggcagctcaggcaggcttggtttcaaga
actgaaagtggacctgggggtgataattcaaagagtcagctccagacattactcacgagg
gcaggatatgctgcgcccggctacaaaactaagcaactaaagaactgtaaattccaatct
agtgtggagttcaatggaatgcagattatggggcagccttgtaataacaagagtgcagaa
taagatgcagcagctgaggccattcagtgactggtgagtggaacacaaatgggccatgag
cacatctatcacatgtcgatgatgttgaagaaaaagcaaaaaaggatcataatggaacta
caatga
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