Argentina anserina (silverweed cinquefoil): 126793175
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Entry
126793175 CDS
T10558
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03022
Basal transcription factors
aans03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126793175
09124 Replication and repair
03420 Nucleotide excision repair
126793175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aans03021
]
126793175
03400 DNA repair and recombination proteins [BR:
aans03400
]
126793175
Transcription machinery [BR:
aans03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126793175
DNA repair and recombination proteins [BR:
aans03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126793175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Tox-REase-7
Motif
Other DBs
NCBI-GeneID:
126793175
NCBI-ProteinID:
XP_050375576
LinkDB
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Position
5:complement(19771385..19778707)
Genome browser
AA seq
597 aa
AA seq
DB search
MSTRRGQVIKRAKYKSSIKDAGTPGLLTMMADGFVFTPNDPTSPAKLDVPFQQIKGQKNT
KEGTNKPPWLNISNIKDGSYIFEFDSYPDLHACREIIANALEAAKGSSATVVSSAAIASS
SASQQFTTAELELRMKLMQEDSELQKLHKQFVGSCVLTESEFWATRKKLLDGDSRRKSKQ
RVGFKSSMILDIKPMTDGRMNKVTFNLTDEIKYQIFALKPAVHQAYIKLVPSKMTEKDFW
NKYFRAEFLHSRKNPLAAAAEAAEDEELAIFLKEDEILAREARQKIQRVDPTLDMEADQG
DDYTHIPDHGIFRDGNKDITELQNEQYRRTLSQDLNRQGAVVLQGRNLDVEDPRTMAEAL
MRSRQDPSDSAIQERLDRIIRMTEIDDLQDSHRHPVAPLCIKDPRDYFDTQQANALKILD
DSRTGTAQTKRKLTTEEAYGSLKDSISKIKSIGLSSSAVKTEVALTVFNGLTQNISSTRY
QLGKNPRESILDGLPNRTKEELLHHWMSIQELLRHFWSSYPITTSSLYVKIGRLKDAMSQ
IYRQLEEIKEAVQLDFRHQVSLLVRPMHQALDAAFQHYEADVQKRAAKSGELPNGNG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgagacggggccaagtgattaagcgcgcaaaatacaagagttcgatcaaagac
gccggaactcccggccttctcaccatgatggccgacgggtttgtcttcaccccgaatgat
cccacctcccccgctaagctcgatgtccccttccaacaaatcaaaggtcagaagaacacc
aaggagggcaccaataaaccaccttggctcaacatcagcaatattaaggatggcagttac
atttttgagtttgacagttatcctgatcttcacgcatgccgagaaatcatcgccaatgcc
ctggaggctgcaaaaggttcttccgctacagtggtctcttctgctgccattgcctcttct
tctgcaagccaacaattcactaccgcggagttggagctccgaatgaagcttatgcaagaa
gacagtgaactgcagaagcttcacaagcagtttgtgggcagttgtgtcttgacagaatct
gagttctgggcaactaggaagaagttgcttgatggagatagccgtagaaagtcaaaacaa
cgggttggttttaaaagttctatgatactggacatcaaacctatgactgatggtcggatg
aacaaggtgacattcaatttgactgatgaaatcaaatatcagatattcgccctgaaacca
gcagttcaccaggcatatattaaactcgttcccagtaagatgacagagaaagacttctgg
aataaatatttccgagctgaattcctccacagtagaaaaaatcctttagcagctgctgca
gaagctgctgaggatgaggaactggcaatttttttaaaggaagatgaaatattagcaagg
gaagctcggcagaagattcagcgggttgatccgacgttggatatggaagctgatcagggg
gacgactatacacatattccagatcatgggatctttcgtgacggcaacaaggacattacc
gaactacagaatgagcaatacaggaggactctatcacaagaccttaacagacaaggggca
gttgttcttcaaggaagaaatctagatgtggaagatccaagaactatggcagaggcactt
atgcggtcaagacaggatcctagcgacagtgctatacaggagagacttgataggattatc
cggatgactgagatagatgaccttcaagactctcatcgtcatccggttgcgccattgtgt
atcaaggatcctcgagactactttgacacacaacaagctaatgcacttaaaattttggat
gactcgcgtactgggactgcacaaacaaaacgcaagctaactactgaggaagcatatggc
tccttaaaggattctatatctaaaattaagagcattggattgagcagttccgctgtaaaa
accgaagttgctcttacggtttttaatgggctaacccagaatatttcaagtaccagatat
caacttgggaagaatcctcgagagagtattttggatggcttgccaaacagaaccaaagag
gaactcttacatcattggatgtccattcaagaactactgaggcatttttggtcttcctat
ccaattacaacttcttctttgtatgtgaagataggcagactgaaggatgccatgtcacaa
atttatcgacaactagaggagataaaagaagctgtgcagttagatttcaggcaccaggtc
tccctccttgttcgtccaatgcatcaggctctagatgctgcttttcagcattatgaagca
gacgtacagaaaagagctgcaaagagtggagagttgcctaatgggaatgggtag
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