Argentina anserina (silverweed cinquefoil): 126793193
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Entry
126793193 CDS
T10558
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126793193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aans03041
]
126793193
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126793193
Spliceosome [BR:
aans03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126793193
Complex C
U5 SnRNP specific factors
126793193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
ARM_KNTC1_3rd
T2SSE
Motif
Other DBs
NCBI-GeneID:
126793193
NCBI-ProteinID:
XP_050375603
LinkDB
All DBs
Position
5:12680689..12688487
Genome browser
AA seq
2170 aa
AA seq
DB search
MSQQNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPHSFGDK
AYHGRPPELDDKLKKKKERDLSGEPAPARQSKRRRLHEESVLTATEEGVYQPKTKETRAA
YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETLKNADKKKEIEKLLNPIPTTVFDNL
VQIGRLVTDYQDGGDAAGSAVANGDEALDDDVGVAVEFEENEDDEEESDLDMVKEEEEDD
DDVAERHEFGAMQMGGGIDDDEMQEANEGLSLNVQDIDAYWLQRKISEAYEKQIDPQQCQ
RLAEEVLKILPEGDDRDVESKLLLHLQFDKFSLIKFLLRNRLKIFWCTRLARAEDQDERK
NIEEEMLRLGRKDLDSIVDQLHATRASAKERQKNLEKSIREEARRLKDESGGDGDRSRRG
LGDGDADDAWLKSQSQLLDLDSLAQEQSRLLVSKKCVLPDGSFRHASKGYEEVHVPALKP
KPFDADEKLVKISAMPEWARPAFKGMTQLNRVQSKVYNTAFYEAENILLCAPTGAGKTNV
AVLTILQQFALHMNKEDGSINHNAYKIVYVAPMKALVAEVVGNLSNRLQDYGVTVRELSG
DQSMTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVTLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKQHIRLVGLSATLPNFEDVALFLRVDKAKGLFHFDNSYRPVPLSQQYIG
IMVRKPLQRFQLMNDLCYEKVMAGAGKNQVLIFVHSRKETAKTARAIRDTALANDTLGRF
LKEDSASREILHTHTELVKSNDLKDLLPYGFAIHHAGLNRADRQLVEDLFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQVYDPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIIT
GHNELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEAIHWLGYTYLFVRMVR
NPTLYGLEADILTRDVLLEDRRRDLIHSAATILDKNNLIKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES
LEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWALLAEKA
LNLCKMVNKRMWSVQTPLRQFHGITNDILIKLEKKDLAWDRYYDLSSQELGELIRMPKMG
RTLYKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDGE
YILHHEYFLLKKQYIDEDHTLNFTVQIYEPLPPQYFIRVVSDRWLGSQAVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNSMYEALYDFKHFNPVQTQVFTVLYNSDDNVLVAAPTG
SGKTICAEFAVLRNHQKASETGMRVVYIAPIEGLAKERYTDWQKKFGMGPKGLNLRVVEL
TGETTTDMKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDEVHLIGGQGGPTLE
VIVSRMRYIASQGENKIRVVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ
GVDLANFEARMQAMVKPTYTAIVQHAKNGKPALVYVPTRKHARLTALDLMTFSGTDGAER
QTFLLRSAEEIEPFVENISDEILAQTLLNGVGYLHEGLTAVDQDIVSTLYEAGYIQVCVM
SGTMCWGVPLSAHLVVVMGTQYYDGRENMHSDYPVTDLLQMMGHASRPKLDNSGKCVIFC
HAPRKEYYMKFLYEAFPVESHLHHYLHDNMNAEVVAKIIENKQDAVDYLTWTFLYRRLTQ
NPNYYNLQGVTQRHLSDYLSELVENTLSDLETSKCIAIEDETDLSPLNLGMIASYYYISY
TTIERFSSSLTSKTKMKGLLEILTHASEYSQLPIRPGEEEVIRRLMNHQRFSFENPKCTD
PHVKANALLQAHFARHHVAGNLALDQREVLLSASRLLQAMVDVICSNGWLNLALLAMEVS
QMVTQGMWDRDSMLLQLPHFTKELAKRCHELPEKSIERVSDLVDMESHERRELLQDILQM
SETEIEDVEQYCKRFPNIEMTFKVLDSENVVAGEEITLQVDMERERVGPVDAPRYPKTKE
EGWWLVVGDTKTNSLLAIKRVPPQKKAKVKLGFAAPGEAGQKTYTLYFMCDSYLGCDEEH
SFTVDVQGAE
NT seq
6513 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagcagaacttaggcggcggtgcggaggcgcacgcgcgctttaagcagtacgag
tatagggccaactcgagtctggttctgactacagactcgaggccacgtgacacgcacgag
cccaccggcgagccggaatcgctgtgggggaagattgatccacatagctttggcgacaag
gcgtaccacggaaggccgccggagttggatgataagctgaagaagaagaaggagcgtgat
ctcagtggggagcctgcacctgctcggcagagcaagaggcgccggctccatgaggagagt
gtgctgactgccacggaggagggcgtttaccagcctaagacgaaggagacgcgggccgca
tatgaggccatgcttagtgtgattcagcagcagttgggcgggcagccgttgaatatagtg
agtggcgcggcggatgagattttggccgtgcttaagaatgagaccttgaagaatgctgat
aagaagaaggagattgagaagttgttgaaccctatacccaccacggtgtttgataatttg
gttcagattgggaggcttgttactgactaccaggacgggggtgatgctgctgggtcggct
gtggctaatggtgatgaagctcttgatgatgatgtgggtgttgcagttgagtttgaagag
aatgaggacgatgaggaggagagcgatcttgatatggttaaagaggaggaagaggacgac
gatgatgtggctgaacggcatgagtttggggctatgcaaatgggaggtggcattgatgat
gatgaaatgcaggaagccaatgagggtctgagccttaatgttcaggacattgatgcttac
tggcttcagaggaagatatctgaagcttatgagaaacagattgatccacaacaatgccag
agacttgctgaagaggtgttaaagatccttcctgaaggtgatgatagagacgttgaatcc
aagctattgttgcaccttcagtttgacaagttcagtcttatcaagttcttgttgcgaaac
cggctgaagattttctggtgcactcgtttggcgagggctgaagatcaagatgagaggaag
aacattgaagaggagatgttgcgtctgggtcgtaaagatttggactcaattgtggaccag
ttacatgcaacaagggctagtgcaaaggagaggcaaaagaacttggagaagagtattaga
gaggaggctcgcaggttgaaggatgagagtggtggagacggggacaggtctaggaggggg
cttggggatggagatgctgatgatgcgtggttgaagagccagtctcagctgcttgatctt
gacagcctcgcacaagagcaaagtagattgttggtgtcaaagaagtgtgttcttccagat
gggtcttttagacatgccagtaaaggttatgaagaagtccatgttccagctttgaagcct
aaaccatttgatgctgatgaaaaacttgttaaaatatctgccatgccagaatgggctcga
ccagctttcaaaggaatgactcagttgaacagggtgcaaagtaaagtctataatactgct
ttttatgaagcggaaaatatccttctatgtgctcctactggggcagggaaaactaatgtt
gcagttctaaccatccttcagcagtttgcgctgcacatgaataaggaagatggttctata
aaccacaatgcttataagattgtgtatgtcgcccctatgaaggctcttgttgctgaagtg
gttggcaatctgtctaatcgtttgcaggactatggtgtcacagtcagggaactaagtggt
gatcagtcaatgactcgccaacaaatcgaagagacccagattattgtcacaactcctgag
aagtgggatatcatcaccagaaagtcaggagatcgtacttatacccaacttgtcacactt
ctcataattgatgagattcatcttcttcatgataatagaggccctgttcttgaaagcatt
gtggctaggacagtcaggcagattgagaccacaaaacaacatattcggttggtgggttta
tctgctacgctgcctaactttgaggatgtggcactcttcttgcgtgttgataaggctaag
ggtctgtttcattttgacaatagttacagacctgtccctctttctcagcagtatattgga
attatggtaaggaagccattgcagaggtttcagttgatgaatgatctctgctatgaaaag
gtgatggctggggctggaaaaaatcaagttcttatttttgtccactcgaggaaggaaaca
gccaaaacagctcgtgctatacgagatacagcacttgctaatgatacccttggcagattt
ctgaaagaagacagtgcaagcagggaaattcttcatactcatactgaattggtcaagagc
aacgatctcaaagaccttctaccatatggttttgctattcatcatgctgggctgaataga
gctgatcgtcaactggttgaggatctctttgctgacgggcatgtacaggtcttggtttct
actgcaacactggcttggggtgtgaatcttccagctcacactgtcataatcaaaggaact
caggtttatgatccagaaaagggagcatggactgaactaagcccgcttgatgttatgcag
atgctgggtcgtgcaggaagacctcagtatgattcgtatggagaagggatcatcattact
gggcacaatgaactacagtactacctttctttgatgaaccaacaacttcctattgaaagt
cagtttgtgtctaaattggcagatcaattgaatgctgagattgttcttggtacggtccaa
aatgccaaagaagctattcattggttaggatacacatatttgtttgttcgtatggtacgt
aatccaacgctgtatggtttggaagctgatattctcacaagagatgttttattggaggat
aggcgacgtgatctgattcattctgccgcaaccattttggacaagaacaatctgattaag
tatgataggaaaagcggatacttccaagttacagacttgggacgaattgctagctattac
tacataactcacggaacaatatctacatataatgagcatttgaagccaacaatgggggac
attgagctatgtagattattctctctcagtgaagaatttaagtatgtcactgttcggcag
gatgaaaagatggaactagcaaagttattagatcgtgtgccaattccagtgaaggaaagc
cttgaagagcctagtgcaaagattaatgttctgttgcaggcatatatttctcagctgaag
cttgaagggctctcattgacatctgacatggtctatatcactcagagtgccgggcgtctt
ctacgagctctatttgagatagtcttgaaacggggatgggctttactagcagaaaaggct
ttgaacttgtgtaaaatggttaacaagaggatgtggagcgtccagaccccacttcgtcag
ttccatggaataacaaatgatattttaatcaagttggagaagaaggatttggcctgggat
aggtattatgacctctcctcacaggaacttggggagcttatacgtatgccaaagatggga
agaacactctacaaattcatccatcagttccccaaattaaaccttgcagcacatgtgcag
ccaatcactcgcactgtattaagggttgaactcactataacaccagactttcagtgggag
gacaaggttcatggatatgtagagccattttgggtaatagtggaagataatgatggagag
tatattcttcatcatgagtattttctgttgaagaagcagtatatcgatgaggatcatact
ttgaactttacagttcagatctacgaaccccttccacctcaatacttcatccgtgtcgtg
tctgataggtggcttgggtcacaagctgttttacctgtttctttcagacaccttattttg
cctgaaaagtaccctcctcctacggaattgttggacttgcaaccacttcctgtaacagca
ttgaggaattctatgtatgaagctctgtacgattttaagcatttcaaccctgtccagacg
caggtcttcacggttctgtataattccgatgacaacgtcttagttgctgcaccaacaggg
agtgggaagaccatatgtgcagagtttgctgtactgaggaatcatcaaaaggcctctgag
actggcatgcgtgttgtgtacattgcaccgattgaaggtctggccaaggaacggtacaca
gactggcagaagaagtttggaatgggtccaaagggtctcaatctacgtgttgtcgaatta
acaggggagacgaccacagacatgaaactgcttgagaaaggtcagattatcataagcact
ccagagaagtgggatgctttatctcggcgctggaagcagagaaaacacgttcaacaggtt
agcctttttattatagatgaagtccacttgattggtggtcagggtggtcctactttggag
gtgatagtctctaggatgagatatatagcaagtcaaggtgagaacaagattcgtgttgtg
gctttgtccacttctctggcaaatgccaaggatcttggagaatggataggtgctacctct
catggccttttcaattttccacctggtgtgcgcccagtgccactggaaatacacattcaa
ggggtggatttagcaaattttgaagcaaggatgcaagcaatggtaaaaccaacatacact
gcaattgttcaacatgccaagaatgggaaaccggctcttgtatatgttcctacaaggaaa
catgcccgcttaacagctctggatctgatgacattctcaggtacagatggagctgagaga
cagacatttttattgcgatctgcagaagagatagagccttttgttgagaatattagtgac
gaaattttggcacagacactgctcaatggagtgggctacctgcatgagggcttaacagct
gtcgatcaagacattgtgtcaactctttatgaagctgggtacattcaagtgtgtgtcatg
agtggtacaatgtgttggggagtgcctttgtctgctcatttggtggttgtgatgggtacc
caatattatgatggccgggagaacatgcattctgattaccctgtcactgatctgttgcag
atgatgggtcatgccagtcgccctaagcttgataattctgggaaatgtgtcatcttctgc
catgctcctcgtaaagaatactacatgaagttcttatacgaagcattccctgttgaaagc
catctacaccattacctacatgataatatgaatgcagaagttgttgcgaaaattattgag
aacaagcaagatgccgttgattacctaacttggaccttcttgtacaggaggctcacacag
aatcccaactattataatcttcagggagttactcagaggcatctttctgattacctctca
gagcttgttgaaaacactctgagtgacttggagacaagcaagtgtattgctattgaggat
gagactgatctttcccctttgaatcttggcatgatagcttcatattattacatcagttat
actacaattgagcgtttcagttcttcattaacttccaaaacaaagatgaagggtcttctt
gagattctaactcatgcttccgagtattcacaacttcctatacgacctggggaggaagaa
gttattcgcaggttgatgaaccaccagaggttttcctttgagaaccccaaatgcacagat
cctcacgttaaagcaaatgctctgcttcaggcccattttgcaagacatcatgtggctggt
aatctagcattggaccagcgagaggtcctcctttctgcaagtaggttgctccaggcaatg
gttgatgtcatttgcagcaatgggtggttaaaccttgctctcctagcaatggaagtcagc
caaatggtaactcagggaatgtgggatcgtgactcaatgcttctgcagcttcctcacttc
acaaaggagctggcaaagagatgccatgaacttcctgaaaagagcatagagagggtttct
gacttggtggacatggagagtcatgagaggcgtgaactacttcaggacatacttcagatg
tcagagacagagattgaagatgttgaacaatattgcaaaaggtttcccaacattgaaatg
acatttaaggtgctggacagtgagaatgtagtggctggggaagaaatcactttgcaagtt
gatatggaacgtgaacgggttggccctgttgatgctccaaggtatcccaagaccaaggaa
gaggggtggtggctggtagttggggataccaagactaactcacttcttgccatcaagaga
gttccaccgcaaaagaaggccaaggtcaagcttggatttgcggctcctggagaagctgga
cagaagacttatactctttacttcatgtgtgactcgtacttgggatgtgatgaggaacac
agtttcactgttgatgtccaaggagcagagtag
DBGET
integrated database retrieval system
