Argentina anserina (silverweed cinquefoil): 126793460
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Entry
126793460 CDS
T10558
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03013
Nucleocytoplasmic transport
aans03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126793460
03015 mRNA surveillance pathway
126793460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126793460
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126793460
5.6.2.5 RNA 5'-3' helicase
126793460
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126793460
mRNA cycle factors
Common to processing body (P body) and stress granule
126793460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
UvrD-helicase
Helicase_RecD
nSTAND3
PhoH
SRP54
AAA_16
ATPase
AAA_22
Ribosomal_S13_N
AAA_25
AAA
TraI_hel_assoc_N
Motif
Other DBs
NCBI-GeneID:
126793460
NCBI-ProteinID:
XP_050375951
LinkDB
All DBs
Position
5:complement(11871040..11882081)
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AA seq
1271 aa
AA seq
DB search
MESQPNNLFDTASQPDTATDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSDRG
GGGSSDHHSDASPVSAAPGSATKSRAGGSGSSGGNNSSSNQVVDALASGMSVLNFEDTGD
DDSYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWD
LSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLEDLEKPGV
DDEPQPVAVKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRVSQGVPADVN
HGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAP
GLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISATGLKVVRQCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ
GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLVNFRFRQVLIDESTQATEP
ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRM
HPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFFGGGPGVVPSDSYGSIAP
SGQGADRRSGRGRGNYLPPGLPNGTHKPGVHPAGYPMPRAPLAPFHGGPLSQPYAIPTRG
AVHGPVGAVPHVPQPGSRGFGAGRGNAGTPIGSHLPHQQGTQPNAGNLGSNFNFPALENP
NSQPSVGGPLSQPGFVNNMPGQGPSQAFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADF
STQASQSGYAVDYVTQGAQGGFPGNFINQNSQAGYSRFGTGNDFMSQDYMAHGTQGLFTQ
VGYNDPSQDDGSQNHYGVGNANALQSQGYMNSLYSQPFTHYNTQPMNLQAPQQQPPQQGQ
SSQNQKSHYNG
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggaatcacagccgaacaatctcttcgacacggcgtcccagccggacaccgccaccgac
gcctacaccttcctcgaattcaacacccagggcgaggacttcgactaccccgagttccgc
gacccgattcgctcccctgtcgcctggcccaccccctccgactccctatccgaccgcggc
ggaggaggaagctccgaccaccactccgatgcgtcgccggtctcggctgctccggggagc
gccaccaagtccagggccggtggctccggcagtagcggcgggaataatagtagtagtaat
caggtggtggacgccctagcgtctgggatgagtgtgctcaactttgaggacactggagat
gatgatagctatgagtttggcaagggggatttcactgagcatgcgtgccggtactgcggc
gtgtcaaatccggcgtgtgttgtgaggtgtaatgtgccgtcgtgccggaaatggttttgt
aattccagagggaacacctccggttctcatattgtcaatcacctggttcgtgcaaaacac
aaggaagtctgtcttcataaagatagccctctaggagaaacaatcctcgagtgctacaac
tgtggatgccgcaatgtattccttcttggatttatttcagccaagacagagagtgttgtc
gttcttctttgtagggaaccctgcttaagtgttaatgcattgaaggatatgaactgggat
ctcagtcagtggtgtcccctgattgatgataggtgtttcttgcaatggcttgtaaaggtc
ccctctgaacaggagcagctgagggcacgccagattagtgctcaacaaataaacaaggta
gaagaactctggaagtcgaatcctgatgcttccctagaagatcttgagaaacctggtgtg
gatgatgaaccccaacctgtggccgtaaagtatgaagatgcataccagtatcaaaatgtg
tttgcacctcttattaagcttgaagctgactatgacaagatgatgaaagaatctcaaagc
aaggacaatctcaccattaggtgggatattggtcttaacaagaagcgtgtcgcttatttt
gtttttccaaaggaggacaatgagttgcgtcttgtaccaggtgacgagctgcgacttcgt
tattctggggatgcagctcatccagcttggcagtctgtgggacatgtcatcaagttaact
gcacaagaagaggttgcactcgaacttcgtgttagtcagggagttccagctgatgtgaat
catggcttcagtgttgatttcgtatggaagagtacaagttttgatcgtatgcaaggagcg
atgaaagcttttgcagttgatgagacaagtgttagtgggtatatttaccatcatctatta
ggccatgaagtagaggtccaaatggtccgtaatacattgcctcgtcgttttggtgcacct
ggtctgccagagctcaatgcatctcaggtttttgctgtgaaaagtgtccttcagaagcct
ataagtttgattcaaggtccacctggcacaggaaaaactgtcacttctgcagcaattgtg
tatcacatggctaaacaaggccagggacaggttttggtttgcgctcctagtaatgtggct
gtggaccaactagctgaaaaaataagtgcaactgggctgaaggttgttagacagtgcgca
aaatcaagggaggctgtcagctctccggttgagcatttaacccttcactatcaggttcgt
catcttgacacatcagaaaagagtgaacttcacaagttacagcaattgaaggatgagcaa
ggtgaattgtcaagtagtgatgagaaaaagtacaaagcgctgaagcgggcaactgagaga
gagatttctcagagtgctgatgtcatttgttgcacatgtgttggtgctggagatccccga
ttggtgaattttcggttccgtcaggtacttattgatgagtcaactcaggcaaccgagcct
gaatgcctcattcctttggtactcggggcaaagcaggttgttttggttggtgatcactgc
cagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccagtctctt
tttgaacgccttgttttactcggtgtgaaaccaattaggttgcaggttcaatacagaatg
catccagctttgtcagaatttccctccaatagcttctatgagggtacactccaaaatggc
gtcaccatcaatgaaaggcaatcaacgggaattgattttccatggccagttcccaatcgt
ccaatgttcttttatgttcagatgggtcaagaggagataagtgctagtgggacatcttat
ctgaacagaactgaagctgctaatgttgaaaagattgtcacaacattcttaaggagtggc
gttgtccctagtcagattggggtgataacaccatacgagggccaacgagcatatattgtg
aattatatgtctaggaatggtgctcttagacagcaactctataaggaaatagaggttgca
agtgtagattcatttcaaggaagagaaaaagattatatcatcctttcatgtgtgaggagt
aatgagcatcagggaattggattccttaacgaccctcggaggctcaatgtcgccctgaca
cgtgctcgatatggtattgttattctggggaaccctaaagttttaagtaagcagcccttg
tggaatagcttgttgacacactacaaggaacatgagtgcttggtcgaaggtccgctaaat
aacttgaagcagagtatggttcaattcccaaagccgaaaaagatctacaatgatcggcgt
ctgttctttggtggtggtccgggcgttgttccaagtgatagttatgggtcgatcgcccct
tccggtcagggtgctgatagaagaagcggtcgtggcaggggtaattacctacctcctggt
ctgccaaatggtacccacaagcctggggtacatcctgctggatatccaatgcctagggca
ccacttgccccatttcatggtggtcccctttctcaaccctatgctattccgactcgtgga
gccgtgcatggaccagtaggagctgttcctcatgtccctcaacctggaagccgaggtttt
ggggccggacgtggcaatgctggtactccaattggtagtcatctcccacaccagcaaggg
acgcagccgaatgcaggaaacttggggtctaacttcaactttcctgctctggaaaatcct
aatagtcagccatctgtgggtggtccattatctcaacctggatttgtcaataatatgcca
ggtcaagggccaagccaagcatttcgagatgggttttccatggggggcatgtctcaggag
ttcttgggtgatgactttaaaagtcagggatcacatgttccttataatgttgctgacttc
tcaactcaggcttctcagagtggatatgctgttgattatgttactcaaggagcacaagga
gggtttccagggaattttataaaccagaattctcaagcggggtactctcgatttggtaca
gggaatgacttcatgtctcaggactacatggcacatggtacacagggtctatttacccag
gtcggctacaatgacccatcacaggatgatggatcgcagaaccactatggagtgggaaat
gctaatgcgcttcagtctcagggctatatgaattctctgtactcccagccttttactcat
tacaacacacagccaatgaacttgcaggctccacaacagcagccgccccagcagggtcag
agctcgcaaaatcagaagagtcactacaatggttaa
DBGET
integrated database retrieval system
