Argentina anserina (silverweed cinquefoil): 126793589
Help
Entry
126793589 CDS
T10558
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126793589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126793589
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
126793589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_14
TPR_16
TPR_8
TPR_12
TPR_19
TPR_CcmH_CycH
TPR_20
TPR_9
TPR_7
TPR_6
DUF6584
BTAD
TPR_Slam
TPR_MalT
TPR_10
Motif
Other DBs
NCBI-GeneID:
126793589
NCBI-ProteinID:
XP_050376108
LinkDB
All DBs
Position
5:16502315..16510933
Genome browser
AA seq
1177 aa
AA seq
DB search
MPHSQDQTNESDLRRLQDSVHNHPDDPSLRFELGVLLWEDDKEKAAEQFIVAAKLNPEIE
KGGAFRYLGLYYAALESQPHAQRALKCLQKAVSLNSDDSVAGEALCDLLDRQGKETLEVA
VCREASESSPRAFWAFQRLGYLQLHQNKCSEAVQSLQHAIRGYPTSPVLWEALGLAYRRL
GRFTAALKSYGRAIELEATRIFALIESGNIYLMLGSFKKGVEAFQQALEFSPQSVSAHYG
LSLGLLSLAKECINLGAFRWGAAVLEEASKVAWKSTHLAGNMSSIWKLHGDILLTYAKCY
PWMEEDCGLEFDVEAFNNSILSWKHTCYVAAKTASCSYQRALHLAPWQANAYSDIAVTSN
YINTLDSSSGHNSSSWQPSEKMALGALLLEGDNSEFWVGLGCLSNHSALKQHAFIRGLQL
NVSLAVAWAFLGKLYRKQGEKQFARQAFDCARSIDPSLALPWAGMSADSHSRESSADEAF
ESCLRAVQILPLAEFQIGLAKLALVSGHLSSSQVFGAIKQAIQRAPHYPECHNLNGLVLE
AQSNYQSAAVCYRLAQCALTNLSGSDTKTYIKDISVNLARALSKAGNAQDALRECELLKK
EGLLDAEASQIYAFSLWQLGQTDRVLTVARNLAESISTVEQESAAAAVILLSRFVYYISG
LDSTINDILQMPKQRFQSSKFSLLVSAIHALDQRNRLKLVGSSIRNNLKTPEEITEMFFL
LALGTLVKHGSEHRLGYQKGIDHVRKSLHMYPNSSLLRNLLGYLLLSSEEWNNTHMATRC
CSIGTDPIKGGLKMSYEILGAGAVACYSAGNSNPKFSYPTCSYQCLNQPGTIQILQKCLR
QEPWNQNVRYLLVLNLVQKAREERFPRHLCIILRRLIIVALSDELYHKPGIAFRYMKFQL
LLCASEICLHDGYLIDCINHAKDASMIMLPDAYLFFAHLLLCRAYASDNDAVNVNREYRR
CLELRTDYNIGWLCLKFIESRYELKSGLDSLELSFKECSEWINSSNMWMALYNLVQGLMS
ISSQDVSSAEVFLSQACSLAGPESTLLLCHGATCMELSRLGYDSQFSSLAVRSLTKAQEA
SLIPLPIVSALLAQAQGSLGSKEKWKKNLRLEWPTWPPELRPAELFFQMHLLAKQSKASA
DSTSIEFCQSPRGWVLRAIHTNPSCMRYWKVLQKLGE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgccacactcgcaggaccaaaccaacgaatccgacctccgccgcctgcaggactccgtg
cacaaccacccagacgatccctccctccgcttcgaactcggagtgttgctatgggaagac
gacaaggagaaagccgccgagcagttcatcgtcgcggcgaagctgaacccggagattgag
aagggaggggcgtttagatacttggggctttactacgccgctctcgaatcgcagccacat
gcgcaaagagctctcaagtgcttgcagaaagccgtgtcgctgaactccgatgactctgtc
gccggggaagcgctgtgtgatttgttggaccggcaggggaaggagacactggaggtggca
gtgtgcagggaggcgtcagagagctcaccgcgggctttttgggcttttcagaggcttgga
tacttgcagcttcatcagaataaatgctccgaagctgtgcagagtcttcagcatgctatt
cgggggtatcctacctctccggttctgtgggaggctcttggccttgcataccggcgactt
ggcaggttcaccgctgctctcaagtcctatggaagagctattgaattggaggctacaaga
atctttgccttgattgaaagcgggaacatctatttgatgcttggttcctttaaaaaggga
gttgaagcatttcagcaagcattggagttctctcctcaaagtgtatccgcacactatggg
ctttctttggggctgcttagtttggctaaggagtgtattaatctgggagcatttagatgg
ggagctgctgtcttagaggaggcatctaaagttgcatggaagagtactcatttagctggt
aatatgtcatccatttggaagctgcatggtgatatactgctcacttatgcaaaatgttat
ccctggatggaggaggactgtggtttagaatttgatgttgaggcattcaataattctatc
ctttcctggaagcatacctgctatgtggctgcaaaaactgccagttgctcttatcagcga
gctttgcacttggccccatggcaagctaatgcatactccgacattgcagtaacttcaaat
tacataaacactttagatagcagttctggacataactcaagttcttggcagccgtcagag
aagatggctttgggggccttgttacttgagggtgacaattctgagttctgggtgggacta
ggatgtttgtctaatcacagtgcgttgaagcaacatgcttttatcaggggactgcaattg
aatgtatcactagctgttgcgtgggcattcttagggaagttgtacagaaaacaaggtgag
aagcaatttgccagacaagcatttgattgtgctagaagtatagatccttctcttgctttg
ccatgggcaggaatgtcggctgattctcattccagggagtcttccgcagatgaagctttc
gagagctgcttgcgagctgtccaaatattgcctcttgctgaattccaaattggtcttgca
aagcttgctcttgtttcagggcatctttcatcttcacaggtgtttggagccatcaagcag
gctatccaacgtgcacctcactatcctgaatgccacaatttaaatggcctagtccttgag
gcacagtccaattatcagtctgctgctgtttgctatagactagcacaatgtgcattaacc
aatttatcaggcagtgatacgaaaacttacataaaagatatatcagtcaatttggcccga
gcactctctaaggcagggaatgctcaagatgctctgcgggaatgtgaacttttgaagaaa
gaagggttacttgatgcggaagcctcacaaatatatgccttttccttatggcaacttggt
cagactgatcgggttcttactgtagcaagaaatcttgcggagagtatctctacagtggaa
caagaatctgcagctgccgctgttattcttttatctagatttgtatattatatttctgga
ctggattcaacaatcaatgacattctccagatgccaaagcaacggtttcagagttctaag
ttcagtttgctagtatctgctatacatgctttggatcaaagaaatcgacttaaactggtt
ggttcaagcatccgtaacaatctgaaaacgcctgaagagatcactgaaatgttcttttta
ttagcgctgggtacactagtgaagcatggatcagaacaccgtcttgggtatcaaaaagga
attgatcatgttaggaagtctcttcacatgtatcctaacagtagtttgttaaggaatctt
cttggttatcttttgctgtcaagtgaagaatggaataatacacacatggcaactaggtgt
tgcagcataggcactgacccaattaaaggcggtttaaaaatgtcgtatgaaattttaggt
gccggagcagttgcttgttattctgcaggcaatagcaatcctaagttctcctacccaaca
tgctcatatcagtgcctgaatcaacctggaaccatacaaatattgcagaaatgtttacgc
caagaaccatggaaccagaatgtaaggtatctgcttgttctaaatctggtacagaaggcg
cgtgaagagagatttcctcgtcatttatgcattatacttaggcggttgataattgtagct
ctttccgatgaactgtatcacaagccaggcatagcttttagatatatgaaattccagctt
cttctctgcgcatcggagatctgtttacatgatggttatttaatcgactgcatcaaccat
gccaaagatgcttcaatgattatgcttcctgatgcctatcttttctttgcacacttgcta
ttatgccgtgcctatgcttcagataatgatgcagtaaacgttaatagagagtatagaaga
tgcttggagctcaggacagattataatattggttggttatgtctgaaattcatcgaatct
cgttatgaattgaaatctggtttggattctttggagttgagcttcaaagagtgctcagag
tggataaattcatcgaatatgtggatggctttatacaatctggttcaaggtttgatgtct
atatcgagccaggatgtctcttccgctgaagtgtttctttcacaagcttgttctttagct
ggtcccgagagcactctcctgctttgtcatggtgccacctgtatggagctttcacgcctg
ggctatgattcacaattctcatcacttgctgtaaggagtctcactaaagctcaagaagct
tccctcattcccttaccgattgtctcagcattgctagctcaagcacaaggaagccttggc
tcaaaagagaagtggaagaagaaccttcgtcttgaatggcctacttggccgccagaattg
aggcctgcagaactgttcttccagatgcacttgctggcaaaacagtcgaaagctagtgca
gactccaccagtattgagttctgtcagagtccacggggatgggtacttcgagcaatccat
acaaatccttcttgtatgagatattggaaagttttgcagaagcttggggaatga
DBGET
integrated database retrieval system
