Argentina anserina (silverweed cinquefoil): 126793894
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Entry
126793894 CDS
T10558
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126793894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aans03400
]
126793894
DNA repair and recombination proteins [BR:
aans03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126793894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_5
CDC45
Motif
Other DBs
NCBI-GeneID:
126793894
NCBI-ProteinID:
XP_050376480
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Position
5:complement(28606569..28614384)
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AA seq
1222 aa
AA seq
DB search
MSSRRRSNGASPLINPQRQITSFFTKATTSPSPSPIPKSNPSHSPTTPSPLQPKSNQREE
VVGKRIKVFWPTDKAWYVGSVKLFDKQTGRHLVQYDDGDEETLDLSIEKFEWLQNNTVST
LKRLRRGPLPPAPPEAEEESHSDDDSGDEDWNKEVVEEEEEVLELEDEDDSDEGLPNSKG
RRGGSSGKRKLSGGGNSGSAKKTKTGGLIDPATNAESTKAINIGDASERFSMREAEKFHF
LGEKRRDANKRCPGDANYDSRTLYLPPVFLKSLSGGQRQWWEFKSKHMDKVLFFKMGKFY
ELYEMDAHIGAKELNLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQME
LRRKEGGSKDKVVKREVCAVVTKGTLTEGEMLSANPDASYLMAVTETSQNFANQNAERVF
GVCVVDVATSRVILGQFPDDLECSALSCLLSELRPVELVKPAELLSPETEKVLLRHTRNP
LVNELVPLLEFWDADRTVSEVKSIYSRADDSHMGVDGSGCLPDVLSQLAGAGENGICALS
ALGGALFYLKQAFLEEALLRFAKYELLPSSGFGGIISKPYMVLDAAALENLEIFENSRNG
DSSGTMYAQLNHCVTAFGKRLLKTWLARPLYHVESIKERQDAVSSLQGINLPHVLEFRKV
MARLPDMERSLARVFASSKASGRNADKVVLYEDAAKKQLQEFISALRGCDLMATTICSLG
ANLENVESCQLHHLLTPGKGLPNVNSVLNHFKDGFDWVEANSSGRIIPHEGVDTEYDSAC
GKVKEIESHLTKYLKEQRKMLGDKSITYVTVGKDAYLLEVPESLRGNIPQDYELRSSKKG
FFRYWSPSIKKSLTELAQAESERESSLKSILQRLIRQFCEHHIKWSQLVSVTAELDVLIS
LAIASDYYEGPTCRPVIRSSSDTNEVPLFSANSLGHPVIKSDSLGKGTFVPNDITLGGTG
HASFILLTGPNMGGKSTLLRQVCLAVILAQLGADVPAESFELSPVDRIFVRMGAKDHIMV
GQSTFLTELSETATMLSSATCNSLVALDELGRGTSTSDGQAIAQSVLEHFVHKVHCRGLF
STHYHRLAVDYQNNSQVSLCHMACQVGNGDGGVEEVTFLYRLTPGACPKSYGVNVARLAG
IPISVLQKAAAKSREFEAAYGKHFKQPEGSFLFQSPFDKMIECIQKFSNTLAKLTSHEST
EGIDIDSLTEVWHNARSLEQQS
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcacgtcgtcggagcaacggcgcgtccccgttgatcaacccacagcgtcaaatc
acttccttcttcaccaaagccactacttctccttctccatctccaatccctaaatccaat
cccagccacagccccaccactccttcgccactccaacccaagtccaatcagagggaggag
gtcgtcgggaagaggatcaaggtgttctggcccactgacaaggcctggtacgtaggctct
gtcaagttgttcgataaacagactggaaggcacttagtccagtacgacgatggggacgaa
gaaaccttggatttgtcaatcgagaaattcgagtggcttcagaacaacactgtctccacc
ttgaagcgcttgcgccgaggtcctctgccgccggctccacccgaggcggaggaggagagt
catagtgacgatgattctggcgatgaggactggaataaggaagtggtcgaggaggaggag
gaggttttggaattggaggatgaggatgatagtgatgagggactgcccaactccaaaggg
aggcgcggcggctcctccggtaagcgaaagttgagtggtggggggaattcggggtcggct
aagaagaccaagactggtggtttgatcgaccctgctactaatgctgagagtacaaaagcg
attaatatcggtgatgcctcagaaaggtttagcatgcgtgaagctgagaagttccatttc
cttggggaaaaacgcagggatgccaataaaagatgtcccggggatgcaaattatgattca
agaactctgtatctacctcctgttttcttaaagagtttatcaggtggccagagacaatgg
tgggagtttaagtcaaagcacatggacaaagttctctttttcaagatgggcaagttctat
gaactttatgaaatggatgcacatataggagcaaaagaacttaatcttcaatatatgaag
ggcgagcaaccccattgtggatttccagagaagaacttttcaatgaatgtggagaaactg
gcaaggaagggttatcgagttcttgttgtagagcagacagaaacacctgaacagatggag
cttcgtcgcaaagagggtggctcaaaagacaaggttgtaaagcgtgaagtatgtgcagta
gttacaaaaggaacactaactgagggagagatgttgtccgcaaaccctgatgcttcttat
ctaatggcagtgactgaaacctctcaaaatttcgcaaaccaaaatgctgagcgtgttttt
ggagtttgtgtggtcgatgttgctacgagcagggttattctcggacagttcccagatgat
ttagagtgcagtgcattgtcttgtctcttgtctgaattgaggcccgtggaactagtaaaa
cctgcagagctacttagtcctgagacagaaaaagtactgttgaggcatacaagaaatcca
ttagtgaacgagttagttccacttttggaattctgggatgctgacagaactgtttctgaa
gtgaaaagtatctatagccgtgcagatgattctcatatgggagtagatggctcgggctgc
ctgccagatgtgttgtctcagctcgcgggagctggggaaaatggcatatgtgcactttca
gctcttggaggtgctcttttctacttgaagcaggcttttctagaagaggcattgctaagg
ttcgcaaaatatgagttacttccaagttctggttttggtggtatcatttcaaaaccgtac
atggttctcgatgcagctgctttagaaaacctcgagatttttgagaacagcagaaatgga
gactcttcaggaactatgtacgcacaactgaatcactgtgtgaccgcatttgggaagaga
ttgcttaagacatggcttgcaagacctctgtatcatgtagagtcaattaaagaacgccag
gatgccgtctcaagtttacagggaatcaaccttcctcatgtccttgagtttcgaaaagta
atggctaggcttccagacatggagcgttcgcttgcacgggtcttcgctagcagtaaagct
agtggaaggaatgctgacaaagtggttttatacgaggatgccgccaaaaaacagctccag
gagtttatttcagctttacgcggttgtgacttaatggcaacaacaatttgctctcttggt
gccaacttggaaaatgttgaatcttgtcaacttcatcatttgctgacacctggtaaaggt
cttcctaatgtcaactcagttttaaaccacttcaaggatggctttgattgggtagaagcc
aatagttctggtcgtataatacctcatgaaggagttgacactgaatacgactctgcatgt
ggaaaagtgaaagagatcgagtcccatttaaccaagtaccttaaggaacagaggaaaatg
ttgggagataaatcgatcacttatgttacagttggaaaagatgcgtatttattggaagtt
ccagaaagtttgcgtggcaatatacctcaggattatgaattgcgttcatccaaaaagggt
ttctttaggtactggtcaccaagtattaagaagtccttgacagagctcgcacaagctgaa
tctgaaagggagtcctcacttaaaagcattttgcagaggctaattagacaattctgcgag
catcatattaagtggagtcagttggtctctgtgactgctgaattggatgtcttaatcagt
ctagcaattgcaagtgattattatgagggacccacctgtcggcctgttatcaggagttca
tcagatacaaacgaagtacccctcttctctgcaaatagtttgggacatcctgttataaaa
agtgattccttaggaaaaggtacatttgtccccaatgatattactcttggaggtactggt
catgcaagctttattcttcttactggccccaacatgggtgggaagtcaactctgcttcgc
caagtttgcttggctgtgattttagctcagttaggagcagatgtgcctgcagagagcttt
gagctgtctccggtcgatcgaatctttgttcggatgggtgcaaaagatcatatcatggta
ggccaaagtacgtttctcacggagctttcagaaactgcaacaatgctgtcatctgctact
tgtaactcattggtagcacttgatgaacttggacgaggaacgtcaacttcggatggacaa
gccattgcgcaatcagttcttgaacattttgtccacaaggttcactgtcgaggattgttt
tctactcattatcacagactagctgttgattatcaaaataattctcaggtttcactctgc
catatggcatgccaagttggaaatggagatggaggtgtggaagaagtgacatttctttat
aggttgactcccggtgcgtgtcccaaaagctatggtgtcaacgtcgcccggttagctgga
attcctatttctgtacttcaaaaagctgctgctaagtctagggaatttgaagctgcatat
gggaaacactttaaacaacccgaaggtagctttctctttcaaagtccatttgacaagatg
attgagtgcatccaaaagttttccaacaccttggcaaagttgactagtcacgaatctact
gagggcattgacattgactccctgactgaagtttggcataatgcaagatcgcttgagcaa
caaagttga
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