Argentina anserina (silverweed cinquefoil): 126796082
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Entry
126796082 CDS
T10558
Name
(RefSeq) uncharacterized protein LOC126796082
KO
K06100
symplekin
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
aans03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126796082
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126796082
U7-dependent histone pre-mRNA processing factors
126796082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
HEAT_2
HEAT
Motif
Other DBs
NCBI-GeneID:
126796082
NCBI-ProteinID:
XP_050378801
LinkDB
All DBs
Position
5:complement(24594756..24610554)
Genome browser
AA seq
1333 aa
AA seq
DB search
MAGGARALNTQALSLLAAVNNHGDLVVKLSSLKQAKDLLLSIDPASAADLFPYLVELQSS
PEPLVRFSLVEVIGEIGLRAMEESSVLMPVLLAFLRDSDSGVARQSIVSGTNLFVSVLEE
MTLQFHRRGKVEIWLEELWSWMAKIKDAIFSIAVQPGSAGTKLLALKFLETHVLLFTSDT
DDSEKPIAEGYRRGFNISWLVGGHPILDSYMLMSEANRALGILLNLLQSAGNLQGSLTVA
VVNCLAAIARKRPVHYGTIVSALFDFDLNFEVVKGRHAASIQYSLRTAFLGFLRCTSPVI
VESRDRLLRALRSMNAGDAGDQVIRQVDKMLKYNERASRDARSGKDDQPSSQLPVSGDLV
RKRPSPLDVEESTNGHEMHLKRSRYVHETYSTLPVQKNDSGWDTTSVNGVTSDLPMLDGE
VTPVEQMITVIGALLAEGERGAESLEILVSTIHPDLFADIVITNMRHLPQMPPLLSRPGL
PVGRQIGSLSCSAQVVSGSPTSSAQTPVLTAQMSFSSATVNSLSVADTSNVNILPVDSKR
DPRRDPRRLDPRCIVVSAELASSPAVEDIGAMQSDIEGSISLNKLNSLPFVTAVESTLVT
PKPKTENDGMVMDSQLVSGNEQPTLREEVLDRPVEDDPTSKVNVSSDLKDSCMQTDEDLD
TMPLSEVEVKDDDYTTSFLESDQHSPALSNTSSSEDLCQDQPEVPIYIELTQEQEQRLGH
LAVERIIQSYKHLHGTDYSQMCLALLARLVAQVDMDDEIIVRLHKHIVVDYQQKKGHELV
LHILYHLEALAVSDSVESSAFALMYEKFLLALAKCLLESFPASDRSFSRLLGEVPVLPDS
TLKLLDELCYSDVIDQHGKDVRDIERVTQGLGAAWSLILGRPHYRQSCLDITLKCAIHPQ
DDIRTRAIRLVSNKLYQLSYISEVIEKFATDMLMSAVKQPLSGIEQSQSESTVQRTDRTF
GSQESSARHLQNLESGNSENDSTMKERPVSTMSIPEAQRFISLFFALCTKKPSLIQLVFD
TYGCAPKAVKQAFERNIPVLIRALGSSNSDLLHIISDPPQGSENLLMLVLQQLTQVTTPS
SDLISTVKHLYETKLKDVTILIPMLSSLAKNEVLPIFPRLVALPLEKFQTALAHILQGSA
HTGPALTPAEVLVSIHSIVPDKEGLTLKKIIDACSACFEQRTVFTQQVLAKALNQMVDQT
PIPLLFMRTVIQAIDAFPSLVDFVMEILSKLVRKQVWRMPKLWAGFMKCVSQTQPHSFHV
LLQLPPPQLESALNKYVNVKGPLAAYACQASIKASLSRPTLAVLDLANEPRLHQSHLPSP
PFHPTDATSSTPT
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggagccagagctctcaacacccaagcactctctctcctcgccgccgtcaac
aaccacggcgatttggtcgtcaagctctcctctttaaagcaggccaaggatttgctcctc
tccatcgaccccgcctccgccgccgacctcttcccctacttggtcgagctccagtcctcc
cctgagcccctcgtccgcttctccctcgtcgaagtgatcggggagattggcttgagagca
atggaggagtcgtctgtactgatgcccgtcctattggcgtttttgagagacagtgattcc
ggcgtcgcaaggcaatcgatagttagtggcacgaacctctttgttagtgtcttggaggag
atgacgttgcagtttcaccggaggggtaaagtcgagatatggcttgaagaactttggtcg
tggatggctaagattaaggatgctatattcagcattgcagtacagcctggttctgcagga
acaaaattgcttgcgttgaaatttttggaaacacatgtgttgctattcacatcggacaca
gatgattctgaaaaaccaattgcagaaggatatagaagaggttttaatatttcgtggctg
gttggtggacaccctattctcgactcgtacatgctcatgtcagaagcaaatagggccctt
ggaattctattaaatttgttgcagtctgctggtaatcttcagggttccttaacagttgcc
gttgtcaattgtcttgcagcaatagcacgaaagaggccagttcactatggcaccattgtt
tctgcattatttgattttgatctgaactttgaagtagtaaagggacgtcatgctgccagt
attcaatattccttaagaactgcgtttttgggattccttcgatgtactagcccagtgatt
gttgagtcgagagatagattgcttagggctctacgctctatgaatgctggggatgctggt
gatcaagtcatccgccaagttgataaaatgctaaaatacaatgagcgtgcttctcgtgat
gctcggtctggaaaggatgatcaaccgtcaagccaactgcctgtttcaggggacttggtt
agaaaaagaccttcgcctcttgatgttgaagagtccactaatggtcatgagatgcatttg
aagcgaagtcgttatgtacatgagacctattcaacattgccagttcaaaagaatgattct
gggtgggataccacttccgtaaatggagtgacctctgaccttcctatgctagatggtgag
gtgactcctgtagagcaaatgattactgttattggtgcattgcttgctgaaggagaaagg
ggcgccgaatcacttgaaattcttgtttcgacaatccaccctgatctgtttgccgatatt
gtaattactaatatgaggcacttgccacagatgccgccacttttgtcaaggccagggctg
ccagttggtcggcagataggctctttaagctgttcggcacaagttgtctcagggtcacca
acatcatctgcgcagactccagttttgactgcccaaatgtctttttcttcagctactgtt
aacagtttatcagttgctgatacttccaatgtgaatatacttcccgttgattccaagcga
gatccacgaagggatcctcgtcgcctggatccacggtgcatagtagtttctgctgaactg
gcatcctcacctgctgtagaggatattggtgctatgcaatctgacattgaaggttcaata
tccttaaataagcttaattcacttccttttgtgactgctgttgaatctactttagtaact
cccaagcccaaaacagaaaatgatggtatggttatggatagtcaattggtttctggaaat
gagcaaccaactctcagagaggaggttctggacaggcctgttgaagatgaccctacttcg
aaggtcaatgtatcttcagatctaaaagattcttgtatgcaaactgacgaggaccttgac
acaatgccattatcagaagttgaagtaaaagatgatgattataccacatcttttctagaa
tctgatcagcattctcctgctctttcaaacacatcgtcatctgaagatttatgtcaggac
cagcctgaggttcccatatatattgagttgacccaagagcaggaacaaagactagggcat
ttggctgttgaacgaattattcagtcatacaagcatttacatggaacagattatagtcag
atgtgcttggcattacttgctcgattggttgctcaggttgatatggatgatgaaataatt
gtgaggctgcataaacacatagttgtggattaccaacagaaaaaggggcatgagctagta
ttgcatatcttgtaccatctggaggctctggctgtgtctgattcagttgaaagttcagca
tttgctcttatgtatgaaaagttcctcctggcactggccaagtgtttgctagagtccttc
ccagcgtcagataggtcctttagtagacttcttggtgaagttccagtcttgcccgactcc
actttgaaactactagacgagctctgctattctgatgttattgatcagcatggaaaagat
gttcgggacattgagcgtgtcactcagggccttggtgctgcctggagtttaattttaggg
cggccacattatcgacaaagctgcctagatatcactttgaagtgtgctattcatccacaa
gatgacatccgaaccagagctatccgactggtgtcaaacaaactctatcagttgagttac
atatcagaagttattgaaaaatttgcgacagatatgttgatgtctgctgtcaaacagcct
ctgtcgggtatagagcaatcacaatctgagtccaccgtgcagagaactgatagaacgttt
ggaagccaagaatcatcagcaaggcatttgcaaaatttggagtctggaaattctgaaaat
gattccacaatgaaggagcgaccagtatcaacaatgtcaattccagaagctcagcgattt
atctctttgtttttcgctttatgtacgaagaaacctagtcttattcaacttgtatttgat
acttatgggtgtgccccaaaagctgtaaagcaggcttttgagcgcaatattcctgttctt
ataagggccctagggtcttcaaattcagatttacttcacattatatcagatcctccacaa
ggaagtgaaaaccttttgatgttggtgctgcaacaattgactcaagtaacaacaccgtca
tctgatctgataagcactgtgaaacatttgtatgaaactaaattaaaggatgtcacaatt
cttattccaatgctttcttcacttgctaaaaatgaggttttacctatattccctcggctt
gttgctcttccattagaaaagttccagactgcacttgctcacatactccagggttcagct
catacaggtccagctttgactccggcagaagtgttggtttctatccatagtattgttcct
gataaagaaggccttactctaaagaagataatagatgcttgctcagcttgttttgagcag
cgcacagtattcacacagcaagtgttggcaaaggcattgaatcagatggttgatcaaact
cctattcctcttctttttatgagaacagttattcaagcaattgatgcttttccttcactg
gttgattttgtgatggagatactttctaaacttgtcaggaaacaggtttggagaatgcca
aagctttgggcagggttcatgaaatgtgtgtctcaaacccagccacactctttccatgta
ttgttgcagttaccaccaccacaactggaaagtgctttgaacaagtatgtgaatgtcaaa
ggtccccttgctgcatacgcttgccaggctagtataaaagcttcgctctctagaccgaca
cttgcagttcttgatcttgcaaatgaaccgcgtttgcaccaatcgcatttgccatcacca
ccgtttcatcctacagatgcaacttcgtcaactccaacatga
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