Argentina anserina (silverweed cinquefoil): 126796267
Help
Entry
126796267 CDS
T10558
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126796267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126796267
03012 Translation factors [BR:
aans03012
]
126796267
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126796267
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126796267
Translation factors [BR:
aans03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126796267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
ATPase
AAA_19
NACHT
T2SSE
nSTAND3
ABC_tran
NPHP3_N
AAA_16
Myosin_head
NB-ARC
TFIIF_beta_N
PhoH
Motif
Other DBs
NCBI-GeneID:
126796267
NCBI-ProteinID:
XP_050379007
LinkDB
All DBs
Position
5:complement(900855..908245)
Genome browser
AA seq
1209 aa
AA seq
DB search
MPYSAFLHRSIIIRTTTTTTATMSLKPRRHHYHISLLLGRFMTTTYAHPVTGLLRWSSGG
VTCMSSSSSQRATDWRPRRRTAATVPQWYQQQRQGYGRLAYQDASASDDSDREFGSGPSS
HREMTGSTIENIDEWRWKLTVLLVRNKDKQELVSRERKDRRDFDHLAELARGMGLYSRQY
SKVVVFSKVPQPNYRPDLDDMRPQREVVLPFGLHEDVDAHLRAHLSQKPMNRGAFSHTSM
SRSISNGSTAKEGLYEQEEPLIQNSVAMERILQQKSLRLRNKQEEWQESEEGQKMLELRR
SLPAYKEKENLLKSISENQVIVVSGETGCGKTTQLPQYILESEIEAGRGGVCSIICTQPR
RISAMSVSERVAAERGENLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRKLRGV
THVIVDEIHERGMNEDFLLIVLKELLSRRPELRLVLMSATLNAELFSSYFNGAPMFHIPG
FTYPVRAHFLENILEMTGYRLNQYNQIDDYGQDKTWKMQKQGQAFKKRKSQIASTVEDAL
EAADFREYSSRTQESLSCWNPDSIGFNLIEHVLCHIVRKERPGAVLVFMTGWDDINSLKD
QLQSHSLLGDPNRVLLLACHGSMPSSEQRLIFDKPEGGIRKIVLATNMAETSITINDVVF
VIDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAGRVQPGECYHLYPRCVYDAFSD
YQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQSPEPLSVQNAVEYLKIIGALDDNED
LTVLGRHLSMLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSMRDPFMMPYDKKDLAESAK
AQFAGRDSSDHLALIRAYDGWKNAERSQAGYEYCWRNFLSAQTLKAIDSLRKQFFFLLKD
AGLVDNTENCNTLSHDEHLIRAIICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVN
GMVPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNISRGGLDGHLKMLGGYLEF
FMNPALANTYVTLKRELEELIHNKLLDPKSDMQSHNYFLSALRLLVSEDRCDGRFVYGRK
MPVPSKKIQKEIGPGTMRVHNNGNSGGNNSKTLLQTLLVRAGHEAPTYKTKQLKNNQFRS
TVIFNGLNFVGEPRNSKKEAEKDAAAEAVLWLKGENHSSSTDLDHMSMLLKKSRKKIHRT
TSLDSAKWS
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgccttactccgccttccttcaccgctctataattatccgcaccaccaccaccaccacc
gccaccatgtccctcaaaccccgccgccaccactaccacatcagtttactcctcggacgc
ttcatgacgacgacctacgcccaccccgtcaccggcctgctcaggtggagctccggcggc
gtcacgtgcatgtcgtcctcgtcgtcgcagcgtgcgacggattggaggccgcggcggagg
acggcggcgacggtgccgcagtggtaccagcagcagcggcaggggtacgggaggcttgcg
taccaggacgcgtcggctagtgacgactccgaccgcgagttcgggtcgggtccgagttct
caccgggaaatgactggttcgactattgagaacattgatgagtggagatggaagttaaca
gtgctgcttgtacgcaacaaagataagcaagaattggtgtcgagggaaagaaaggacaga
cgtgatttcgatcatcttgcggaattggcaagagggatggggttatatagccgtcagtat
tcaaaggttgtagtctttagtaaagtccctcagccaaattatagacctgatctggatgat
atgcgaccacagagagaggttgtcttaccttttgggctgcatgaagacgtagatgctcat
ctcagagctcatctatctcaaaagccaatgaatagaggagctttttcacatacttcaatg
tcaaggtcaattagtaatggaagtacggctaaagagggactctacgagcaggaggagccc
ttgatacagaatagtgttgctatggagcgaattcttcagcagaaaagcttgcgattgcgc
aataagcaagaagaatggcaggaatctgaagaaggccaaaagatgcttgaacttcgtaga
agtctgcctgcttataaggagaaagaaaacttgttaaaatccatatctgaaaatcaggtc
atagttgtatcaggtgaaacaggttgtggtaaaactacacaacttcctcaatacatttta
gaatctgagattgaagctggtcgtggaggtgtctgtagtattatttgtactcagcctaga
cgaatatctgcaatgtctgtttctgaaagagttgctgcagaacgaggggagaatctgggg
gaatcggttggttataaagttaggctggaaggaatgaaaggccgggacacgcggcttctt
ttttgcaccactggcatattattgaggagattacttgttgacagaaagttgagaggtgtt
acacatgtcattgttgatgagattcatgaacgtggaatgaatgaagattttcttcttatt
gttctgaaagaacttctctctcgtcgccctgagttgagattagttttgatgagtgcaact
ttgaatgctgagcttttctcctcttactttaatggtgctccgatgttccatatacctggg
tttacatacccagtccgagcacattttctggagaatattcttgaaatgactggataccgg
ttaaatcaatataatcaaattgatgattatggtcaagataagacgtggaaaatgcagaaa
caaggtcaagctttcaagaaaagaaaaagccaaattgcttccactgttgaggatgcactt
gaagctgctgactttagagagtacagttcaaggactcaggagtctctgtcatgttggaat
ccggactccattggttttaatctcattgagcatgtgctctgccacatagtcaggaaagaa
cggcctggtgctgttttggtttttatgactggctgggatgacataaactccttgaaggat
caactccaatctcattcccttttaggagatccgaatagggtcctgctgcttgcatgtcat
ggttccatgcctagctctgaacagaggttgatatttgataaaccagaaggtggaattagg
aaaatcgttctggctacaaacatggccgagaccagtatcactatcaatgatgtagtattt
gtgattgattgtggaaaggcaaaagaaacatcatatgatgcactcaataacactccttgt
ttgcttccgtcctggatatcaaaggctgcatcccggcaaagaagaggaagagccggtcgt
gttcaacctggcgagtgttaccatctttatccccgatgtgtatatgatgccttttctgat
tatcagttgcctgaacttttgaggacacctctgcagtctctatgtttacaaatcaagagt
ctacaacttggaagtatttcagagtttctttctaaggcactacagtcaccggaacctttg
tcggttcaaaatgcagttgagtatttgaagatcattggggctttagatgacaatgaagat
ctcacagtattaggtcgccacctgtcaatgctgccagttgagccaaaacttgggaaaatg
ctcatattaggggctatcttcaactgtttagatccaataatgactattgttgcaggcctt
agtatgagagatccattcatgatgccctatgacaagaaggatcttgcggaatcggcaaaa
gcacaattcgctggccgtgatagcagtgatcatcttgctctcatccgagcatatgatggt
tggaaaaatgctgaaagatcacaagctggctatgagtactgctggaggaattttctttct
gcacaaactcttaaagccattgattctctacggaagcagttcttctttttgctcaaggat
gcaggtttggttgacaacactgagaactgcaatacattgagccatgatgaacatcttatc
cgagcaatcatctgtgcgggattatttcctggaatatgttctgttgtgaacaaagagaag
tcgatttcgttgaaaacaatggaagatggacaagtacttctatactcgaattctgtcaat
ggtatggtgcctaaaattccatatccatggctagttttcaatgaaaaggtgaaagtgaat
tcagtattccttcgggactcaactggcatatctgattcagtgctccttttgtttggaggc
aacatttccaggggcgggctggatgggcacctgaagatgttgggagggtacttggagttt
ttcatgaatcctgcattagcaaatacatatgttaccttgaagagggaacttgaggaactg
attcacaataagcttctagatcccaaatcggacatgcaatctcataattacttcttatct
gccctaagattactggtgtctgaagaccgatgtgatggtagatttgtctatggtcgcaag
atgccagtaccttcgaagaagatacaaaaagagataggaccaggcacaatgagggttcac
aataatggtaatagtgggggtaataattccaaaactctgctgcaaacattgcttgtgaga
gcaggacatgaagctcccacctacaaaacaaaacaattgaaaaacaaccagtttcgttcc
acagttatcttcaatgggttgaactttgtgggggagcctcgcaatagtaagaaagaagca
gaaaaggatgcagctgctgaagctgtgctctggctaaagggcgagaaccattcatcttcc
acagatcttgaccatatgtccatgcttctaaaaaagagtcgaaagaaaatccatagaacg
acttcattggatagcgccaagtggagttga
DBGET
integrated database retrieval system
