Argentina anserina (silverweed cinquefoil): 126798267
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Entry
126798267 CDS
T10558
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126798267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126798267
03012 Translation factors [BR:
aans03012
]
126798267
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126798267
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126798267
Translation factors [BR:
aans03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126798267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
DEAD
HA2_C
OB_NTP_bind
HA2_N
Ank_2
Ank_5
AAA_19
nSTAND3
AAA_22
Ank
ATPase
Ank_3
AAA_23
ResIII
PhoH
ABC_tran
AAA_7
Motif
Other DBs
NCBI-GeneID:
126798267
NCBI-ProteinID:
XP_050381140
LinkDB
All DBs
Position
6:complement(29833639..29840792)
Genome browser
AA seq
1370 aa
AA seq
DB search
MLRGRKKNKGFHPPVVSEEARTRLDNLLQVFFDSNAQDYTFGPELTANERAYVHKYCGKM
DMKSKSSGSGKNRRVRVYRLFRREAKSNGCNANDIIPSVMFSEGSAEVLGDLFVRYPPGD
GGEDKERICEGSQKFQKALRMKDPMFCKPSMSQEDIAERVQRLASKMKNSKIMEDRSKLP
MASYRDAVTSAVESNQVILIFGETGCGKTTQVPQYLLDHMWGKGETCKIVCTQPRRISAI
SVAERISYERGQEVGRDVGYKIRLESKGGRQSSVVFCTNGILLRILISRGVGMSIGDASN
EETKQQDLSDITHIIVDEIHERDRYADFMLAILRDLLPSYPHLRLILMSATVDAERFSQY
FGGCPVIRVPGFTYPVKTFYLEDVLSILRSIEHNHLDKPALGGSTSDYDLLEEDKLALDE
AISMAWSDDDFDPLLELISTQGTCRSYDYQHSVTGLTPLMVFAGKGRVDYVCMLLSFGAD
CQLRAGDGTTALELAERLDQLESAQVLKDHMESALSNSIKQQNLLDKYLQYFNPENIDVI
LIEQLLRKICSDSKDGAILVFLPGWDDIRKTEDRLLMNPYFRDPSKCVIIPLHSSVPAAE
QRKVFSRPRGGCRKIVLSTNIAETAVTIDDVVYVVNTGRMKEKDYDPFSNVSTLHSSWVS
KASAKQRQGRAGRCQPGICYHLYPRLRAASLSDYQVPEIRRMPIEELCLQVKLLDPDCKI
DEFLNKTLDPPQSETIRNAISVLQDIGALSVDEKLTELGEKLGSLPVHPLTSKMLFFAIL
MNCLDPALTLACAADYKDPFLLPMMPEERQKALDAKAELCSLYGGHSDQLAVIAAFNCWK
LAKQQGKENRFCAKYFVSGSTMYMLAGMRNLLQTELIRLGFIPEDVSRCSLNAQNPGIIN
AVLVAGLYPMLGKMLISAKGGKIKGSFIEIPNGSKVRLHTRSIISKSEFRTCGGSPLVVF
DEITRGDGGSSIRNCSLVGPLPLLLLSSEIAVAPANDDEESDVDDNDYGSDEDAMEIDCQ
SGGQREEKIMSSPDKSVMVIVDGWLYFQSKALDIAQIYCLRERLSTAILFKVTHPKEVLP
PDLGESIYAIACVLSYDSLSGIPLQKSTDLPTSYREIMIGKSGKVVLRDNEDESAELKQS
LGRSVCQKFLPQATDLPASNGAAKLSADQSIHSALPSADQSIHSAPPPLGSAPANTTPPS
PSHVHVPVGKVKLKVKKKKASESKQLLGQSVCQKPLSQATDLPASNGAAKLSDNPSIIGV
APLPGSASTDTIPSSLSQVPAPVEKVKVKKNKAKKSKQPSGQSVPGDVVEIATDLPASNG
AAKLSCDSSSIHITPPSALADTTPLPPSQVPAPAGLVEGKKRKKHRNQAG
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggggacggaagaagaacaaaggattccatccccctgtggtatcagaagaagcc
aggacccgattagacaacttgctccaggtgttcttcgattccaatgcacaagattacaca
ttcgggccggagctcacggctaatgaacgggcctacgtgcacaaatattgcgggaaaatg
gatatgaaatccaagagcagcgggtctggtaaaaacaggagggttcgggtttacaggctg
tttaggagggaggcaaagagcaatggctgcaatgctaatgacataatccctagtgtgatg
ttttcagaaggctcagcagaagttttgggggatttgtttgtgcgctacccgcctggagat
ggaggggaggacaaagaaaggatttgtgagggtagtcagaagtttcagaaagccctgcgg
atgaaagaccccatgttctgcaaaccttcaatgagccaggaagatatcgccgagagagtg
caaagacttgcttcgaaaatgaagaactccaagattatggaagacaggtctaagctacca
atggcgtcctacagggatgcagtaacgtcagcagttgaatctaatcaggttattcttata
tttggtgagactgggtgcggaaagaccacacaggtcccacaatatctcttggaccatatg
tggggtaagggtgagacatgtaaaatagtgtgcactcaacccaggcgtatctcagccata
tcagttgctgagagaatctcttatgaaagaggtcaggaagttggcagggatgttgggtac
aagatacggctggaaagcaaaggtggaaggcagtcatccgttgtgttctgcacaaatggg
attctgttgaggattctaatatccagaggtgttggtatgtcaataggagatgcatcgaat
gaagaaaccaaacaacaagatctgtctgacataactcacattattgtggacgaaattcat
gaaagggatcgctacgctgattttatgctggctattctcagagacctgcttccctcatat
cctcatctgcgtctgattttgatgagtgcgactgttgatgcggaacgcttctcacagtat
tttggtggctgcccggttatccgtgtcccagggttcacttatcctgttaaaactttctat
ttggaggatgtgttgtctatcttgagatctatagaacataatcacttagataagcctgca
ttaggtggctcaacctcagactatgacttattagaggaagataagctcgctttagatgaa
gcgattagtatggcttggtcagatgatgattttgatccacttcttgaattgatttcaact
caaggaacctgtcgaagttatgattaccagcattctgttactggacttacaccattaatg
gtgtttgctggaaagggtagagtagattatgtttgcatgctgctatcatttggggcagac
tgccaattgcgggctggcgatggaaccactgcattggagttggctgagcgcttagaccaa
ttagagtctgctcaagtgctgaaagatcatatggaaagtgctctttctaactccatcaaa
cagcaaaatttgctcgataagtatctccaatattttaatcctgagaatattgatgtcatt
cttattgagcaattgttaaggaaaatttgtagtgattcgaaagatggagcaattcttgtt
tttcttcctgggtgggatgatataagaaaaactgaggacagattactcatgaatccatat
ttcagagatccttcgaagtgtgtgattatacctctacattcaagtgttccagctgctgaa
caaaggaaggtcttcagtcgtccacgtggtggttgccgaaaaattgttctttcgaccaat
attgctgaaactgcagtcaccattgatgatgtcgtttatgttgtaaacactggtcggatg
aaagaaaaagattatgatccttttagtaacgtttcaactctacactcttcctgggtatcg
aaagcgagtgccaagcagcgacaggggcgtgcaggccgttgtcaacctggaatttgttat
catctttaccctagacttcgagctgcttcattgtcagattatcaggtgcctgagattagg
agaatgccaatcgaggagctttgccttcaggtgaagttacttgatccagattgcaagata
gacgagttcctaaacaagacactggatcctcctcaatcggagacaatacgcaatgcgatt
tctgttcttcaagatatcggggctttatcggtggatgaaaaacttacagaacttggggaa
aagctaggttctttacctgttcatccattgacgagcaaaatgctattctttgctatactg
atgaactgtctcgacccagctttaactctggcctgtgctgctgactacaaggatccattc
ttgcttcctatgatgcctgaggaaaggcagaaagctcttgatgctaaggctgaactatgt
tcattgtacggtgggcatagtgatcagctagcagtcatagcagcattcaactgctggaag
cttgcaaaacagcagggtaaggagaatcggttttgtgctaaatactttgtctctggaagt
accatgtacatgcttgctggtatgcgaaatctactccaaacagagctaattcggctgggg
tttattcccgaggatgtgtcaagatgtagtttaaatgcacagaacccaggtatcatcaat
gcagttctggtggccggtttgtatcccatgttgggaaaaatgcttatttctgctaaggga
ggaaaaataaagggatcctttatagagattcctaatggtagtaaagttcgtttgcacact
cgttctattattagtaaatcagagttcaggacatgtggtggttccccattggttgtattt
gatgagataacccgtggggatgggggttcgagcatacgaaactgtagtctggttgggcca
cttccattattattgctgtcatcagaaatagctgttgcgccagccaatgatgatgaggaa
agtgatgtcgatgataatgattatggaagtgatgaagatgcgatggagatagattgtcag
tcgggtggacagcgggaagagaagattatgtcatcacctgataaatccgtcatggttata
gtggatgggtggctttattttcagtcgaaagctcttgacattgcacagatctattgcttg
agggaacgcctttcgacagcaatactattcaaggtgactcatccaaaggaagttttgcct
ccagatcttggggaatctatttatgctatagcatgtgttttatcttatgatagtctatct
gggattccattgcaaaagtctacggatttaccgacaagttatagggagattatgattggt
aaatctggaaaggtagttcttagagacaacgaagatgaatcagcagaattgaagcagtca
ttaggccgtagtgtttgccagaagtttctaccacaagctactgatttgcctgcctcaaat
ggagctgcaaagttgagtgctgaccaatcaattcatagtgctctgccaagtgccgaccaa
tcaattcatagtgctcccccaccactgggttcagctcctgcaaacacaactccgccgtcc
ccctcgcatgttcatgttccggtgggaaaggtaaaactcaaagtgaaaaagaagaaagca
tcagaatcgaagcagctattaggtcagagtgtttgccagaagcctctatcacaagccact
gacttgcctgcctcaaatggagctgcaaaattgagcgacaacccatcaattatcggtgtt
gccccactgccgggatcagcttccacagacacaatcccatcatccctgtcgcaagttcca
gctccggtcgaaaaggtaaaagtgaaaaaaaataaagcaaaaaaatcaaagcagccatca
ggtcagagtgttcccggggatgtggtagagatagctactgatttgcctgcctcaaatgga
gctgctaagttgagctgtgactcatcatcaattcacatcactcccccatcagcacttgca
gacacaacaccgctgcccccgtcgcaagttccagccccagcaggtctggtcgaaggaaag
aagcggaagaagcaccggaatcaagctggttga
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integrated database retrieval system
