Argentina anserina (silverweed cinquefoil): 126800654
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Entry
126800654 CDS
T10558
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126800654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126800654
03012 Translation factors [BR:
aans03012
]
126800654
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126800654
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126800654
Translation factors [BR:
aans03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126800654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
FoP_duplication
AAA_19
Motif
Other DBs
NCBI-GeneID:
126800654
NCBI-ProteinID:
XP_050384007
LinkDB
All DBs
Position
6:complement(12614330..12621147)
Genome browser
AA seq
1041 aa
AA seq
DB search
MCYLLSTLRTTTHRFLPTHFFAAPPLLTFRSPFSTLAMSSRPNFRGGRRGAGPNSRGGGG
RRGGGRGGGGRGGRGGEQRWWDPVWRAERLRQQAAEMEVLDSNEYWGKMEQFKGGAEQEM
IIRRSFSRHDQQTLYDMAYELGLHFHAYNKGKAIVVSKVPLPDYRADLDDVHGSTQKEIR
MSTETAERVGSLLQSSQGQGSKQASGNVALAASGSGQGIKQTPVNENATRPCSRLEPDTG
MEKEKLSLQLKESQEKIKLSNSLKEMLMFREKLPACNVKSEFLRAVSENQVLVVSGETGC
GKTTQLPQFILEDEISRLHGADCNIICTQPRRISAVSVAARISSERGENLGETVGYQIRL
ESKRSAQTRLLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRR
PDLRLILMSATINADLFSKYFGNAPTIHIPGLTFPVAELFLEDILEKTQYKIKSESDKME
RGNSRRKRQQDSKKDPLTELFEDVDIDLRYKTYSTCTRKSLEAWSGLQLDLGLVEATVEH
ICRYEREGAVLVFLTGWDDISKLLDKIKGNRFLGDSEKFMVLPLHGSMPTVNQREIFDRP
PPNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRR
GRAGRVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVESFLAKALQ
PPDSLAVHNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALT
IAAALAHRDPFILPIDRKEEADAAKRSFAGDSFSDHIAVVKAFEGWKDAKRNGSGKSFCW
DNFLSPVTLQMMEDMRLQFVDLLSTIGFIDKSKGASAYNEYSHDLEMVSAILCAGLYPNV
VQCKRRGKRTAFYTKEVGKVDIHPGSVNAGIHLFPLPYMVYSEKVKTASIYIRDSTNISD
YSLLLFGGNLIPTKTGEGIEMLGGYLHFSASKSVLELIRRLRRELDKLLNRKIDNPALDV
SSEGKRVVSAVVELLHSPIER
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgtgttatttactctccactctccgcacaaccacccaccgcttcctccccactcacttc
ttcgccgctccacctctcctcactttccgctcccccttctccactctcgccatgtccagc
cgccctaacttccgcggcggccgcaggggtgccggccccaactcccgcggcggcggaggc
cgtcgtggtggtggtcgcggcggcggaggccgtggaggacgaggcggcgaacagcgctgg
tgggacccggtctggcgagcggagcgactgcggcaacaagccgccgagatggaggttctt
gattcgaatgagtactgggggaagatggagcagtttaaaggcggagctgagcaggagatg
ataatccggcgtagttttagtcggcatgatcagcaaaccctgtatgatatggcttatgag
ctagggcttcacttccatgcttataataaggggaaggctattgtggtcagcaaggtgccg
ttgccggattaccgcgccgaccttgatgatgttcatggttccacacaaaaagagattcgg
atgtctacagagactgcagagagagtcggaagtcttttgcagagctcgcaggggcaggga
agcaaacaagcttctggcaatgtggctttggccgcgtctggttctggccagggaatcaaa
caaacacctgttaatgaaaatgcaaccaggccttgctccaggttggagcctgatactggt
atggagaaagagaaacttagccttcaactcaaggagtcacaagaaaaaataaagttaagt
aatagtctgaaagaaatgctgatgttccgagaaaagcttccagcatgcaatgtgaagtct
gagttcttgagagctgtttctgaaaatcaggtgttggtagtctcaggtgagacgggttgt
ggcaaaacaacacaacttcctcagtttattctagaagatgagatctcacgtctgcatggt
gctgactgcaatattatatgcactcaacctcgtcggatatctgctgtgtctgttgctgct
cgtatatcctctgaaaggggagagaatcttggtgaaactgttggttatcagatccgactg
gaatcaaagcgctctgctcaaactagattgttattttgcaccactggagtattacttcgt
cagttggttcaagacccacagttaactggtgtgagccatttattggttgatgaaatccat
gaaagaggcatgaacgaagactttctgctaataattttgcgtgaccttcttcctcgacgt
ccagatctacgacttattttaatgagtgcaaccattaatgctgatttgttttccaagtac
tttggaaatgccccaacaatacatataccgggattaacgtttccagtagcagagctattt
ctagaagatattttggagaaaactcaatacaaaatcaagtcagagtccgacaagatggag
agaggaaattccaggagaaagagacagcaagactctaagaaggatccattaacagaacta
tttgaggatgttgatattgatcttcgctacaaaacttatagcacatgtacaagaaagtct
ctagaagcttggtctggtttacagcttgatttgggtctggtagaggcaactgtggaacat
atatgtcgctatgagagagagggagcagttctcgtgttccttacgggctgggatgatata
tcaaagttacttgacaaaattaagggaaatagattccttggagattctgagaagttcatg
gttcttcccctgcatggatcaatgcctacggtcaatcaacgagaaatatttgatcgtcct
ccccctaacaaaagaaaaatagtgctagcgacaaacattgcagagagcagcattaccata
gatgatgttgtatatgtcatagactgtggaaaggcaaaggaaaccagttatgatgcctta
aacaagttggcttgtcttttgccgtcatggatttcaaaggcttcagcacatcagagacga
gggcgtgcaggccgtgtccaacctggtgtttgttacagactatatccaaaaatgattcat
gatgcaatgctccaatatcagttacctgaaattcttcggacacctttgcaagagctatgc
ctccacataaaaagtttgcagcttggagctgttgaatcatttttggcaaaagcacttcaa
ccaccagattctcttgcagttcataatgccatcgaacttctcaagactattggagcttta
gatgatatggaggagcttactcctcttggccgccatctctgcacacttccattggatcca
aacatcggaaagatgcttctaatgggttctatctttcaatgcctcaatcctgccttaaca
attgctgctgcccttgctcatcgagacccatttatcctaccaatagataggaaagaggaa
gctgatgctgcaaaaagatcctttgctggtgattctttcagtgatcacatagcagttgtc
aaagcttttgaaggatggaaagatgcaaaacgtaacggatcaggaaaatcattctgttgg
gataactttttatcaccagtcaccttgcagatgatggaggatatgaggctccagtttgta
gatctgttatcaaccattggctttatcgacaaatctaagggtgctagtgcttacaatgaa
tacagccatgacttggagatggtgtctgcaattctctgtgctgggctttatccaaatgtt
gtgcagtgtaaaagaagaggaaagcgaacagcgttctacactaaagaagttggtaaagtt
gatatccatcctggatcagtcaatgctgggattcatttattccctctgccttacatggtt
tatagtgaaaaagtgaagacagccagcatttacatcagagactctacaaatatatcagat
tattctctgcttttatttggtggtaatctcatcccaaccaaaactggggagggcattgag
atgctcggaggttaccttcatttctctgcatcaaagagtgttttggagttgattcggaga
ttgcgccgtgaacttgacaagcttctaaacaggaagattgacaacccagcattggatgtg
tctagtgagggaaagagagtggtatctgctgtggttgagctattgcatagcccaattgaa
cgctaa
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integrated database retrieval system
