Argentina anserina (silverweed cinquefoil): 126800864
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Entry
126800864 CDS
T10558
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126800864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aans03041
]
126800864
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126800864
Spliceosome [BR:
aans03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126800864
Complex C
U5 SnRNP specific factors
126800864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
AAA_11
AAA_25
T2SSE
Motif
Other DBs
NCBI-GeneID:
126800864
NCBI-ProteinID:
XP_050384241
LinkDB
All DBs
Position
6:complement(368219..375015)
Genome browser
AA seq
2159 aa
AA seq
DB search
MMSQPKLGGGAEAHARSKQYEYRANSSLVVATGLRSRGTHEPTGEPESLRGKIDPHCFGD
KAYRGRPDDESSKMMMKKKKKKERDGGDEAGLTRRKRRRVEARSVLSETDEGGVYQPKTR
ETQAAYEALLGLIQQQLGGLPPSVVSGAADEILAVLKNEKLKSSVKKSEIEKLLNAVPES
VFDGFVRIGALITDYHDACAACGDESVGDFGVSVEFEENEDNEEGSDLDLVPEDDEEAEE
EEEEVGDFGAMQMGGGFDDVEMLEANEGVRLNVQDIDAYRLQRKISEAFGKQIDAAQCHR
LAEEVLGMLLEGNDMTVENKLVHYLNFKNFELIKFLLRNRLKIFWCTRYARAVGEEEKRR
VEEEMLQVGLGSVVDELHATRRGAKERLQNFERGIREEARKLKSIGGDGDMAGRGLVDRD
GDNGWWNNNHPRLLDLERLAPRHLEPKKCLLPDGSSRCHSRKGVEEVHVPALKPKPFGAN
EKLVKIFDMPEWARPAFKGMTQLNRVQSKLYEAAFQNGDNILLCAPTGAGKTNVAVLTIL
QQFALNMNEDGSINHNAYKIVYVAPMKALVAEVVGNLSDRLQEYGVTVKELSGDQTLTSH
QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTLRQ
METAGGYIRLVGLSATLPNYEDVAKFLHVDFDRGLFHFDNSYRPVPLSQQYIGITVKKPL
QRFQLMNDICYEKVMAVAGKHQVLIFVHSRAETARTASALRDTVLVNDAVGRFLKEDSAS
REILLTHTELVKSNHLKDLLPYGFAIHHAGLNRADRELVEDLFASGHVQVLVSTATLAWG
VNLPAHTVIIKGTQIYDSEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHTELQY
YLSMMNQQLPIESQFVSRLADQLNAEIVMGTVQNAQEACHWLEYTYLYIRMCRNPMLYGL
EANVLTKDPKLEERRADLIHSAATILEKNNLIKYGGRSGYFQFTDLGRIASHYYITHGTI
SAYNMDLKPTMGDIELYRLFSLSEEFKYVNVRQDEKMELVKLFERVPIPVMESLEDPSCK
INVLLQAYISQLKFEGFSLTQDMVYITQSAGRLVRALFEIALKQGWAQLADKTLNLCKMV
NKRMWSVQMPLRQFHGITKDILVKLGKNNLAWERYYDLSSQELGELVKMPKMGRILHKFV
HQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVLVEDNDGEHILHHEY
FLLKKPYINEDHTLNFTVKIKEPLPPYYLIRVVSDRWLGSQTVLPVSFRYLILPEKYPPP
TELLDLQPLPVTALRNPLYEALYQDFKQFNAVQTQVFNVLYNSDDNVLVAAPTGSGKTIC
AEFAVLRNYQKASESGIRVVYIAPVEGLAKERHADWQKKFGMGCNGLNLRVVELTGETAT
DLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGHTLEIIVSRM
RCMASELEMKIRIVALSSSLANAKDLGGWIGAASHGLFNFPPSVRPVPEIHIQGVDIVNY
EARMQAMTKPTYTAIVQHAKKGKPALVYVPTRKHVQQTAQDLINYSNAECGGNSSFLLRS
LDEIEPFFEKISNEKLRDCLRHGVGFLHEGLTGDDQDIVSALFEAEYIQSCVMSSTLCWG
VPLSAHLVVVMGTQYYDGRENLHTDYPVPDLLQMIGRACRPKKDNSGICVILCHAPQKEY
YKKFLYEALPVESHLHHYLHDNINAEVVAQVIGNHEGALNYLTWTFFYRRLTQNPNYYNL
QGVTHVHVSEYLSELVENTLSDLETSKCVAIENGDVSALNLGIIASYYYISYSTIERFNS
SLTSRTKMKGLLEILAHASEYSQISIRPGEEEVIQRLINHQRFSFENPNCTDPHVKANAL
LQAHFARHHVAGNLSMDQREVLLSASRLLHAMVDVIASNGWLNISLLAMEVSQMVTQGMW
DCDSMLLQLPHFTRELAKRCQEFPGRNIERVSDLVDMEYVGRRELLQELQMSDIQLEDIE
QFCKRFPNIEMTFKVLESENIRAGEEITLQVNVDREQVGPVDAPRYPRTKEEGWWLVVGD
TKTNSLLAIKKVPLLKKAMMQLRILAPAEAGEKTYTLYFMCDSYLGCDEEHNFTVDVKE
NT seq
6480 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgcaacccaaattgggaggcggtgcggaggcgcacgcccggagcaagcagtac
gagtatcgcgccaactccagcctggtggtggccaccggcttgaggtcacgtggcacgcac
gagcccaccggcgagccggagtcgctgcggggtaagattgatcctcattgcttcggcgac
aaggcgtacaggggaagaccggacgacgagtcgtcgaagatgatgatgaagaagaagaag
aagaaggagcgcgacggtggcgatgaagctggtttgactcgccggaagcggcggcgtgtt
gaggcgcggagcgtgcttagtgagacggatgagggaggtgtgtaccagccgaagacgagg
gagacgcaggcggcgtacgaggcgttgctcggtttgattcagcagcagctcggcggtctg
ccgccgagtgtagtttccggcgcggccgatgagatcctggcggtgctgaagaatgagaag
ctgaagagttccgtgaagaaatcggagattgagaagctgttgaatgctgtaccggagtcg
gtgtttgatggctttgtgaggattggggctttgattaccgattatcatgatgcctgtgca
gcttgtggtgatgaatctgttggcgattttggagtttcggttgagtttgaagagaatgag
gacaatgaggaagggagtgatcttgatttggtgccggaggatgatgaggaagcagaggag
gaggaggaggaggttggtgatttcggcgcaatgcaaatgggtggagggtttgatgatgtc
gaaatgctggaagcgaatgagggtgtgaggcttaatgtgcaggacattgatgcttatcgg
cttcagaggaagatttcggaagcttttggcaagcagattgatgcagcgcagtgtcacagg
ctcgccgaggaggttcttgggatgctactcgaaggtaatgatatgactgtcgaaaataag
ctggtgcattatcttaattttaagaattttgaactaattaagtttctgttgcgaaaccgg
ttgaagattttctggtgcactcgttatgcacgagctgtaggggaggaggagaagaggaga
gtcgaggaggagatgttgcaggtggggttgggatcagttgtggatgagttgcatgccacg
aggcgtggtgcaaaggagaggctacagaactttgagagggggattagagaagaggctcga
aagttgaagagtattggcggagatggggacatggctgggaggggacttgttgatagggat
ggtgataatggttggtggaataataaccatcctcggttgcttgatcttgaaagacttgca
cctagacatttggagccgaagaagtgcctgcttccggatggatcttccagatgtcattca
aggaagggggttgaagaagttcatgtgccggcattgaagcctaaaccatttggtgctaat
gagaaacttgtgaaaatttttgatatgccagaatgggctagaccggcgtttaaaggaatg
actcagttgaatagggtacagagtaaactttacgaggctgcttttcaaaatggtgacaat
atcctcctatgtgctcctactggggcagggaaaactaatgtagctgttctcactatcctt
cagcagtttgcacttaacatgaatgaggatggttcaatcaaccacaatgcttataagatc
gtatatgttgctcctatgaaagcacttgtagctgaagttgttggcaacttgtctgatcgt
ttgcaagagtatggtgtcacagtgaaggagctaagtggtgaccagacactgactagccac
caaattgaagagactcaaatcattgtcaccactcctgagaagtgggatatcattaccaga
aagtcaggagatcgtacttacacgcaactcgtgaagcttctaattattgatgaaattcat
ctcctccatgacaataggggtcctgttctcgaaagcattgtagcaagaactcttaggcag
atggagactgctggaggttatattcggctggtgggactatctgccacgctccctaactat
gaagatgtagccaagttcttacatgttgattttgataggggcttgtttcattttgacaat
agctacaggcctgtccctctttctcaacagtacattggaatcacagtaaagaagccattg
cagaggtttcagttgatgaatgatatctgctatgaaaaggtgatggcagtagctggaaaa
catcaagttcttatatttgtccactccagggcagaaacagccaggactgctagtgcttta
cgagatactgtgcttgttaatgatgccgttggtaggtttttgaaagaagacagtgcgagc
agggaaattcttctcacacatactgaattggtcaagagcaatcatcttaaagatctttta
ccgtatggttttgctattcatcatgctgggttgaatagagcagaccgcgagctggttgag
gatctctttgctagtgggcatgttcaagttctggtctcaactgcaacacttgcttggggt
gtgaatctgccggctcatactgtcataatcaaagggacccagatctatgattcagaaaag
ggagcatggactgaactaagtcctcttgatattatgcagatgttgggtcgtgcaggaaga
cctcagtatgattcgtatggagaggggataatcattactggccatactgaactgcaatac
tatctttctatgatgaaccaacaacttcctattgaaagtcaatttgtgtccagattggca
gatcagttgaatgctgaaattgttatgggaactgttcaaaatgctcaagaagcttgtcac
tggttggaatacacttatctgtacattcgcatgtgtaggaatcctatgctctatggtttg
gaagctaacgttctcaccaaagatccaaaactggaggagaggcgagctgatttgatccat
tctgctgcaaccatcttggagaagaacaacttaatcaagtatggcggaagaagtggatat
ttccaatttacagacttgggtcgcattgctagccattattacataactcatgggacaata
tcagcatataatatggatttgaagccaactatgggggatatcgagctctaccgattgttc
tcgctcagtgaagagtttaagtatgtcaatgtgcggcaggatgagaagatggaattagta
aaattattcgaacgtgttcccattccggtcatggagagcttggaagatcccagttgcaag
attaatgttttgctgcaagcatatatttcacagctgaagtttgaggggttctcattgaca
caggatatggtttacattacacagagtgctggacgtcttgtacgagctcttttcgagatt
gctttgaaacaaggatgggctcaacttgcagacaagactttgaacttgtgtaaaatggtc
aacaagaggatgtggagtgtccaaatgccacttcgccaattccatggaataacaaaagat
atcttggtaaagttggggaagaataatttggcatgggaaaggtattatgacctctcttca
caggagctaggggagcttgtaaagatgccaaagatggggagaatacttcataagttcgtc
caccagttccccaaattaaaccttgcagcacatgttcagccaattactcgaacagtactc
agagttgagcttaccataacgccagacttccaatgggaggacaaagttcatggctacgtg
gagccattttgggtacttgtggaggataatgacggggaacatattcttcatcatgaatat
tttttgctgaagaagccatatattaatgaggatcatactttgaacttcactgttaaaatt
aaagaaccccttccaccttactacttaattcgtgttgtatctgataggtggcttgggtcg
cagactgttttgcctgtttctttcagatacctcatcttacctgaaaagtatcctccaccg
acagagttattggacctgcaaccgcttcctgtgaccgcattaaggaatcctctatacgaa
gctttgtatcaagatttcaagcagttcaatgctgttcaaactcaggtcttcaatgttttg
tataactctgatgacaatgttttagttgctgcaccaacaggcagtgggaagaccatatgc
gcagagtttgctgtattgaggaattatcaaaaggcctccgaaagtggcatacgtgttgtg
tacattgccccggttgaaggtcttgccaaggaaaggcatgctgactggcaaaagaagttt
ggaatggggtgcaatggtcttaatttgcgggttgttgaattaacaggggaaacagctaca
gatttaaagctacttgaaaaaggtcagatcatcatcagcactccagagaaatgggatgct
ttatctcgccgttggaaacagaggaagcatgttcaacaagttagtctttttattatagat
gaactacacttgattggtggtcagggtggtcacacactggagataatagtatctaggatg
agatgtatggcaagtgaacttgagatgaagattcgtattgtagcactgtcaagttcgctt
gcaaatgccaaggatcttggaggatggataggggctgcatctcatggccttttcaatttt
cctcccagtgtgcgcccagtgcctgaaatacacattcagggggttgatatagttaattat
gaagcaagaatgcaggctatgacaaaaccaacatacactgcaattgttcaacatgccaag
aaaggaaaaccagctcttgtatatgttcctacaaggaaacatgtccaacaaacagctcag
gatctgataaattactccaatgctgagtgtggtgggaattcctcatttctgttgcgatct
ttagatgagattgagcctttctttgagaaaatcagcaatgagaagttgcgagactgtttg
cggcatggagtgggattcttgcacgagggactaaccggtgatgatcaagacattgtgtca
gcactttttgaggccgagtacattcagtcatgtgtcatgagcagtacactatgttgggga
gtgcccttgtcagcacatttggtggttgtgatgggaactcaatactatgatggccgggaa
aatcttcacactgattacccagttcctgatctcttgcagatgattggtcgtgcttgtcgc
cctaagaaagacaattctggaatatgtgtcattctctgccatgcccctcagaaagaatac
tacaagaagttcctatatgaggcgttgcctgttgagagccatttgcaccattacctacat
gacaatataaatgctgaagttgtagctcaagtaatcggaaaccatgaaggggctctcaat
tacctcacatggacttttttctacaggaggctcacacaaaatcccaactattataatctt
cagggagttacacacgtgcatgtttctgagtacctttcagagcttgtggaaaatacactg
agtgacctggaaacaagcaagtgtgttgctatcgagaatggggatgtttctgccttgaat
ctaggcataatagcttcatactattacatcagttattctacaattgagcgtttcaattcc
tctttaacttctagaacaaagatgaagggtcttcttgagattctagctcatgcttcggag
tactctcagatttccatacgacctggagaggaagaggtgattcaaaggttgattaaccac
cagaggttttcctttgagaatcccaactgcacagatcctcatgtcaaagcaaatgctctt
cttcaggcccatttcgcaagacatcatgtggctgggaacctatcaatggaccagcgtgag
gttctcctttctgcaagtaggttgcttcacgcaatggttgatgtcattgccagcaatgga
tggctaaacatttctctgctagcaatggaagtcagccagatggtcactcaggggatgtgg
gattgtgattcgatgcttctacagcttcctcacttcacaagggagctggcaaagagatgc
caagagtttcctggaagaaatatagagagggtatctgatttggttgacatggagtatgtt
gggaggcgtgaactacttcaggaactgcagatgtcagatatacagttggaggatattgaa
caattttgtaaacgatttcccaacattgaaatgacatttaaggtgctggagagtgagaat
ataagagctggggaggaaatcactttgcaagttaatgtggaccgtgaacaggttggcccc
gttgatgcaccaaggtatccaaggaccaaagaagaggggtggtggctagtagttggggat
accaagactaactcattgcttgccatcaaaaaagttccgctactaaagaaggcgatgatg
caacttagaattttggcccctgcagaagctggagagaagacgtatacactgtatttcatg
tgtgattcatatttggggtgtgatgaggagcataacttcactgttgatgttaaagaatag
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integrated database retrieval system
