Argentina anserina (silverweed cinquefoil): 126801955
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Entry
126801955 CDS
T10558
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126801955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126801955
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126801955
U7-dependent histone pre-mRNA processing factors
126801955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
126801955
NCBI-ProteinID:
XP_050385415
LinkDB
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Position
7:22571586..22576428
Genome browser
AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTVDAVLL
SHPDTLHLGALPYAAKHLGLAAPVFSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQNVTRLTNAQHHHLTGKGEGIVISPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
KHLNGINQSSFVRPAVLITDAYNALNNQPYRRQKDREFTETIKKTLRSQGNVLLPVDTAG
RVLELLQILESCWNEESLPFPIYFLTYVASSTIDYVKSFLEWMSDAMAKSFETTRDNAFI
LKRVKLLVNKSELDNAPEGPKVVLASMASLEAGFSHDIFVEWATDSKNLILFAERAQFGT
LARMLQADPPPKAVKVTMSKRIPLVGEELIAYEEEQNRIKKEEALKASLIKEEELKASHG
PDVSMSDPMVIDTNNAKSLPDVGPRGGGCRDILIVGFTPPSTSVAPMFPFYENNSEWDDF
GEVINPDDYVIKDEDMNQGAMLVGGDMDGKFDEASASLILDSRPSKVVSSELTVPVKCLL
IYMDFEGRSDARSVKSILSHMAPLKLVLVHGTAEATEHLKQHCLKHVCPHVYAPQLEETI
DVTSDLCAYKVQLSERLMSNIIFKKLGENEIAWFDSDVGKTEDEMLSLIPCSTPAPPHKP
ILVGDLKLADFKQFLADKGVQVEIAGGALRCGEHVTIRKIGDASHKGGGAGSQQILIDGP
ACEDFYMIRDYLYSHFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacttcggttcaggtgacgccgctgtgcggagtctacaatgagaatccactctcc
tatctcgtctccattgacggcttcaacttcctcatcgactgtggctggaacgaccacttc
gacccctccctccttcaacctctctccagagtcgcctccaccgtcgacgccgtcctgctc
tcacatcccgacactctccacctcggcgcgcttccctacgccgccaagcacctcggcctc
gccgcgccggtcttctccaccgagccggtttaccgcctcggccttctcaccatgtacgat
cagtacctctctcgcaagcaagtttccgagttcgatttgtttactctggatgatattgat
tctgctttccaaaatgtcaccaggctgaccaatgctcagcatcatcatctcaccggtaaa
ggagagggaattgttatctcgccgcatgtggctgggcatttgttgggaggtactgtgtgg
aagataactaaggatggggaggatgtcatatatgctgtcgatttcaatcatcggaaagag
aagcatttgaacggaatcaatcagtcatcatttgtgcggcctgctgttctgataacagat
gcctataatgctttgaacaatcagccttatagacgccagaaggacagagaatttacagag
actataaagaagactctaagatctcaaggaaatgtgctactgcctgttgatactgctggg
cgagttttagaacttcttcaaatattggaatcttgttggaatgaggaaagtttgcctttt
cccatctacttcctaacgtacgttgcttctagcacaattgattatgtcaaaagtttcctc
gagtggatgagtgatgcaatggccaagtcctttgagacaactagagacaatgcttttatt
ttgaagcgtgtgaagcttcttgttaacaaaagtgaacttgacaatgccccagaaggccca
aaggttgttttagcatccatggctagtctggaagcgggtttttctcacgatatatttgtc
gagtgggcaactgattccaaaaatcttatactttttgcagaacgagctcagttcggcaca
ttagctcgtatgcttcaggcagacccacctccaaaagctgttaaggtcaccatgtccaag
aggatccctttggttggagaggagctgattgcttatgaagaagagcaaaaccgaattaaa
aaggaggaagctctaaaggctagtctgattaaagaggaggagttaaaagcttctcatggg
cctgatgtcagcatgagtgatccaatggttattgatacaaacaatgcgaagtctttgcca
gacgtgggtccacgtggtggaggatgcagagacatcttaatcgtcggatttactcctcct
tctaccagtgttgctcctatgtttcccttctacgaaaataattccgagtgggatgacttt
ggggaagtcataaatccagacgattatgttatcaaggatgaagacatgaaccaaggagca
atgcttgtgggaggtgatatggatggaaaatttgatgaagcctctgctagcttaattctt
gactcaaggccttcgaaagttgtgtcgagtgaattgactgtgcctgtgaagtgcttactg
atatatatggactttgagggccgttctgatgcgagatctgttaaatcgattctttcccat
atggctcctctaaagcttgtattggttcatggaacagctgaggccactgaacatttgaag
caacactgcttgaaacacgtatgccctcatgtctatgctcctcaacttgaagaaacaatt
gatgtcacatccgatttatgtgcttataaggttcaactgtccgagaggctcatgagtaac
attatctttaagaagcttggagagaatgaaatagcttggttcgattctgatgtagggaag
acagaagatgaaatgctgtctttaataccctgctcaactccagctccaccacataaacca
atcctagttggtgacctgaaattggccgatttcaagcaatttcttgctgataaaggggtc
caggttgaaatcgctggtggggctttgcgatgtggtgaacatgtcacaattcgcaagatt
ggggatgcaagccataagggtggtggtgctggttcgcagcaaattttgatcgacggtcca
gcatgtgaggacttttacatgataagggactatctgtactcgcacttttatttactttag
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