Argentina anserina (silverweed cinquefoil): 126802376
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Entry
126802376 CDS
T10558
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126802376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aans03041
]
126802376
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126802376
Spliceosome [BR:
aans03041
]
Complex C
Other components
Step II factors
126802376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
Sigma54_activ_2
AAA_30
nSTAND3
TsaE
AAA_16
PhoH
ABC_tran
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
126802376
NCBI-ProteinID:
XP_050385951
LinkDB
All DBs
Position
7:13212197..13218307
Genome browser
AA seq
1194 aa
AA seq
DB search
MAADDGLKKLEYLSLVSKVCSELETHIGTADKVLAEFITEMGRNCESVDEFDAKLKEHGA
EMPDYFVRTLLTIIHAILPPEAKSKNNLKKDSTAEGSKSKFKALAIADNKDRIKDIQREI
EMETKEKRNDREELGDAREDYRSRGRDRDRGRGRERDSDRDRDRDRDRDRRERGRDIYDR
DKRRRDSHYHDSDKGRHTDRSKHRRDEYEGDGDVREDDDDDRRGSRDQRKELHHSDEPEL
YKVYKGRVSKVMDTGCFVQFNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISI
SGQKLSLSMRDVDQHTGKDLLPLKNNAEDDSLRTNPSISKDDGPVARTGLSGIRIVEEDV
TVPSRRPLKRMSSPEKWEAKQLIASGVLGVKEYPMYDEETDGMLFEEEGAEEELEVELNE
DEPAFLQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPK
DLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTVTFGQRSKLSIQEQRQS
LPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGCTQPRRVAAM
SVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIML
DEAHERTIHTDVLFGLLKKLVKRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPV
EILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNV
PELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNV
YNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSVPEIQRIN
LGTTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFP
LDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLT
LLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIR
KAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMRE
VIVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgatgatggtttaaagaagctcgagtacctttccctggtttccaaggtctgc
tctgagttggaaactcatatagggactgcggacaaagttcttgctgagttcataactgag
atgggacgaaactgtgagagtgtggatgaattcgatgccaaattgaaggaacatggtgct
gagatgcctgattactttgtccgaacactcctaactatcattcacgcaattcttcctcca
gaggcaaagtccaagaacaatttgaagaaagatagcactgctgaaggtagtaaaagcaag
ttcaaggctttggcgattgctgataacaaggataggataaaggatatccagagggaaatt
gagatggagaccaaggaaaagcgaaatgacagagaagaattgggcgatgcgcgtgaagac
tataggtccagaggtagagatagagatagaggtagaggtagggaaagagattcagatcga
gacagagaccgagatagggatagagacaggagagagaggggaagggatatatatgataga
gataaaaggcggagagatagtcattatcatgattctgataagggaaggcatacagatcga
tccaagcacaggagggatgagtatgaaggggatggagacgtcagagaagatgatgatgat
gataggagaggaagtagggatcagaggaaagaactgcaccattctgatgagcctgaattg
tacaaggtttataagggtagggtatcaaaagtgatggacacaggttgctttgttcagttc
aatgacttcagagggaaggaaggtttggttcacgtttcgcagattgcgactcggcgaatt
ggaaatgctaaagatgtggtgaaaagagaccaagaggtctatgtcaaggtgatttcaatt
tctggtcagaagttgagcctttcaatgagagatgttgatcagcatactgggaaggatttg
cttcccttgaagaataacgcagaggatgattctcttaggacaaacccatcaatatcaaag
gatgatgggcctgtggcaagaacgggtctctctgggattaggattgtggaagaggatgta
actgttccatctcgccggccattgaagagaatgagctcgccagagaagtgggaagccaaa
cagttgattgcctcgggtgttttgggtgtcaaagagtatccaatgtatgatgaagaaaca
gatgggatgctttttgaagaagagggagctgaggaagaacttgaggttgagcttaatgag
gatgagccagcctttttgcaagggcaaaccaggtattcagtagatatgtcacctgtgaaa
atcttcaagaatccagaaggttcattaagtcgtgcagctgcacttcaatctgcactcatt
aaggagcgtagggaagtgcgtgaacagcagcaaagaacaatgctggattcaattccaaag
gatctgaatcgtccttgggaagatccaatgccagagactggtgagaggcatcttgcacag
gaactcagaggtgttggtttgtccgcctatgacatgccagagtggaagaaggatgctttt
gggaagactgtcacttttgggcagaggtcaaagctttcaattcaggaacagaggcagagc
ttgcctatctataagctgaagaaagaattggttcaggcagtgcatgataatcaagttctt
gttgttattggtgaaactggttcaggcaagacaacccaggtaacacagtatcttgcagaa
gctggttacacgacaatgggcaagattgggtgtacgcaaccacgtagggtggctgcgatg
tctgtagccaaaagggttgccgaagagtttggttgtcgtctgggggaggaagttggatat
gctattcgttttgaggattgcactgggccggatactgtaatcaagtatatgacggatggt
atgcttcttagagagattctgatcgacgagaacctgtctcaatactctgtgattatgctt
gatgaagctcatgagaggacaatccatacagatgttctttttggattattgaagaaactt
gtgaagcgtagaccagaccttcgtttgattgtcacatctgctaccttggatgctgagaaa
ttttcgggttatttcttcgactgcaacattttcactatccctggaagaacttttcctgtg
gagatactctacaccaagcagccggaaagtgattaccttgatgcatctttaatcactgtt
ctgcaaattcacttaacagagccggaaggtgacatccttcttttcttgacgggacaggaa
gaaattgattttgcatgccagtcactttatgagagaatgaaaggtcttggtaaaaatgtg
cctgagttgattatcttaccagtatatagtgcccttcctagtgaaatgcagtcaagaata
tttgacccagccccacctggtaagaggaaagtagttgtggctactaatattgctgaggca
tcactgaccatcgacggtatattttatgtaattgaccctggatttgcaaagcaaaatgtt
tataacccaaagcaggggctagattcactggtcattaccccaatttctcaagcgtcagcc
aagcaacgagctggccgtgctgggcgtactgggcctgggaaatgttaccgcctttacact
gagagtgcataccgcaatgagatgtcccctacttcagttccagaaattcagaggataaat
cttgggactactacacttacaatgaaagcaatggggataaatgatctcttgtcttttgat
tttatggatcctccttcaccccaagcactcatttctgctatggaacaactgtacagttta
ggcgcgctagatgaggagggtcttctgacaaagttgggtaggaaaatggccgagtttcct
ctggatccaccattatctaagatgctactagccagcgtggaccttgggtgtagtgatgag
atcctgaccatcattgctatgattcagacaggaaatatattttataggcctagggaaaag
caagcccaagctgatcagaagagagccaagtttttccagccagaaggagatcatctgact
ttacttgcagtctatgaggcttggaaagctaaaaacttttcagggccttggtgttttgag
aatttcgttcagtctcgatctcttaggagagcgcaagatgtcagaaaacagcttcttagt
atcatggataagtataaactggatgttgtgagtgctggaaagaattttacaaagattagg
aaggcaattactgctggctttttcttccatggtgctagaaaggaccctcaggagggttat
agaaccctggtggagaatcagcctgtttatattcatccaagcagtgctctcttccagaga
caaccggattgggtcatctaccatgaattggttatgactacaaaggagtatatgcgggag
gtgatagttgttgaccctaaatggcttgtggaactagcgcccaggttcttcaaagttgct
gaccctaccaagatgagtaagcgcaagcgtcaagaacgtattgaaccgctctatgacaga
taccatgaaccaaactcctggcgtcttagtaaacggcgtgcttga
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