Argentina anserina (silverweed cinquefoil): 126805002
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Entry
126805002 CDS
T10558
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03020
RNA polymerase
aans03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126805002
09124 Replication and repair
03420 Nucleotide excision repair
126805002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aans03021
]
126805002
03400 DNA repair and recombination proteins [BR:
aans03400
]
126805002
Enzymes [BR:
aans01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126805002
Transcription machinery [BR:
aans03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126805002
DNA repair and recombination proteins [BR:
aans03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126805002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
126805002
NCBI-ProteinID:
XP_050388046
LinkDB
All DBs
Position
1:complement(5164601..5172389)
Genome browser
AA seq
1828 aa
AA seq
DB search
MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK
FKTALRIKNPKNRLKKILDASKNKTKCEGGDDLDVQDTDEPLKKSRGGCGAQQPKLSIDG
MKMVAEYKAQRKKSDDQEQLPEPVERKQVLTAERVLSVLKRISDEDCQLLGLNPKYARPD
WMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGSPAHIISEF
AQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV
ITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD
GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR
LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL
GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLQ
RTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARK
FLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSLEP
EPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC
VGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL
IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLD
SLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRSVFDAEVSKLETDRLQLG
TEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVPGD
DLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPGEM
IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPE
ANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEVNP
DKISPWLLRIELNREMMVDKKLSMADIAEKINAEFDGDLTCIFNDDNAEKLILRIRIMNE
ETPKGDSQEDSAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKAEQ
EWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDGSY
VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDHLR
GVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTPYR
DGMMSPNYLLSPNMRMSPMSDAQFSPYVSGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP
GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKYSPSVAYSPSSPRLSPAS
PYSPTSPNYSPTSPSYSPTSPSYSPSSPSYTPGSPYTAGVSPDYSPSSPQYSPSAGYSPS
QPGYSPSSTGQYTPQTSEKGDKDDRSTR
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggacatccgcttccctttctccccctgcgaggtcgccaaggtccgccgcgtccagttc
ggcatactcagccccgacgaaatcaggcagatgtctgtggtgcagattgagcacagtgag
acaatgctgggagggaagccgaagacggcggggttgagtgaccctcggctggggacaatt
gaccggaagctcaagtgtgagacttgcacggcgaacatggccgagtgccccggccacttt
ggacacctggagcttgccaagcctatgtttcacatcgggtttatgaagactgtgctgtct
ataatgcgctgcgtctgctttaactgctccaaaatccttgttgatgaggatgaccacaag
tttaagacagctttgaggataaagaatccgaaaaatcggctgaagaaaattttggatgcg
agcaagaataaaacaaagtgtgaaggaggtgatgatcttgatgtgcaggataccgacgag
cctttaaagaaaagccggggcgggtgtggtgctcagcagcccaagctgtctatagatggt
atgaagatggttgcggagtataaagcacagaggaagaagagtgatgaccaggagcagctt
cctgaacctgtggagaggaagcaagtccttaccgccgagagggttcttagtgtattgaag
aggatcagtgatgaggactgtcaattactgggattgaacccaaagtatgcacgtcccgat
tggatgattctgcaagttcttcctattcctccacaacctgtgagaccttccgtgatgatg
gatacctcctcgaggagtgaggatgatttgacacatcagctggctatgattatccgccac
aatgagaatctaaggaagcaggaaagaaacggatcacccgctcatattatctcagagttt
gcacaacttttgcaattccacatagctacatattttgataacgagttgcctggactacca
agggctacacagagatcagggagacctatcaaatcaatttgtagtaggcttaaggcaaag
gaaggccggattagaggaaacttaatggggaagagggttgatttctcagcacgtacagtt
attacaccagacccgaacataaatattgatcaattaggagtaccatggagtattgcgttg
aatctcacttaccctgaaactgtgactccttacaatattgaaaggttgaaggagcttgtt
gagtacgggccccatcctccaccaggtaaaactggtgcaaagtatataataagagatgat
ggacaaaggcttgatctacgttacttgaagaaaagtagtgatcaccatttggagcttggt
tataaggtggagcgtcatttgaatgatggagactttgtcctcttcaatcgtcaacccagt
ctgcataaaatgtctatcatggggcacagaatcaaaatcatgccttactcaacttttcga
ttaaatctctctgtcacttcgccttataatgctgattttgatggagatgaaatgaacatg
cacgttccccaatcatttgaaacaagggcagaagtgttggagctaatgatggtgcccaaa
tgcattgtctcgcctcaatcaaatcgtcctgtgatgggaattgtccaagatactctactt
ggttgtcgtaagatcacgaagagggataccttcatagagaaggatgttttcatgaacatc
ttgatgtggtgggaggattttgatggaaaagtacctgctcctgcaatattgaaaccacgg
cctctttggactggaaaacaggtgtttaatctcataataccaaagcaaataaatctccag
agaacttcagcatggcactcggagtcagaaactggtaacatcacccctggtgacactcac
gttagaatagaaaaaggcgagttactttctggaactctgtgcaagaaggcacttgggaca
tctactggaagtcttatacacgtcatatgggaagaggttggtccagatgctgcccggaag
ttccttggtcatacccaatggctagtgaattactggctgttgcagaatgcttttagcatt
ggaattggggatactatcgctgatgcagcaacgatggaaaagatcaatgaaactatttcc
aaggctaaaaatgaagttaaagaacttatcagtaaagcccaatctaagagtctggaacct
gaaccagggcgaactatgatggattcttttgaaaacaaagtgaatcaggtcttgaatagg
gctcgtgatgatgctggaagtagtgctcagaagagtttgtctgagagtaacaatctgaag
gctatggttacagccggttccaagggaagtttcatcaacatatcacagatgactgcttgt
gtgggacagcagaatgttgagggtaaacgaattccttatgggttcatagaccgtacttta
ccccatttcactaaggatgactatggaccagaaagtcgtggctttgttgagaattcatac
cttcgaggattaactccacaggagttctttttccatgctatgggaggtagggaaggtctt
atagatactgctgttaagacatctgagactgggtatatccagaggagactggtgaaggct
atggaggatattatggtcaaatatgatgggactgtgagaaattccctgggggacgtcata
cagtttctctatggagaagatggaatggatgctgtatggattgaatctcaaaagctggat
tctctaaaaatgaaaaagaaggagttcgacaagacctttgcctatgtgttcgatgatgaa
aattggaatccggactatatgctgcctgaacatgttgaggatctgaaaactattagagag
ttccgcagtgtgtttgatgcagaagtttcgaagcttgaaactgataggcttcaacttggc
acagagattgctgtcactggtgataattcttggcccttgcctgttaacctgaagaggctc
atttggaatgcccaaaaaacctttaaaatcgacttcaggaggacttctgatatgcatcca
atggaaatcgttgaggctattgataaactccaggagaggttgagggttgttcctggtgat
gatttgttgagtgttgaagcacaaaagaatgcaactctctttttcaacattttgctccgc
agcacttttgctagtaaaagggtgttggaggagtacaggctcactcgtgaggcatttgag
tgggtaattggggagatagagtcacggttcctgcagtcacttgtagcgcctggagaaatg
attggttgtgtagctgcacagtctattggtgagcctgccactcagatgaccctcaatacc
ttccattatgctggtgtgagtgcaaaaaatgttacactaggtgtacccaggttgagggaa
attatcaatgttgccaagcgaatcaaaactccatccttgtctgtttacttgaagcctgaa
gctaataaaacaaaggagagggccaagaatgtgcagtgtgccttggaatatactacctta
cgtagtgttactcaagccacagaagtatggtacgatccggatccaatgagcacattaata
gaagaggatcttgattttgtgagatcttactacgaaatgccagatgaagaggtcaaccct
gataaaatatctccatggttgcttcgtattgagttgaatcgtgaaatgatggtggataag
aaattgagcatggctgacatcgctgagaagataaacgctgaatttgatggtgatttaact
tgtatttttaacgatgacaatgctgagaagttgatccttcgaattcgtatcatgaatgag
gaaactccaaaaggggactcacaagaagattctgctgaagatgatgttttcctgaagaag
attgagagtaacatgcttacagaaatggctcttcgaggtatcccggatatcaacaaagtg
ttcataaagcatggtaaagttaacaagtttgatcagaatgaaggatttaaagcagagcaa
gagtggatgttagatacagaaggtgttaatcttttagcagtgctgtgccatgatgacgtt
gatgccaggagaacgacaagtaatcatttgatagaaattattgaagttcttggtattgag
gctgttcgtcggtctttgctggatgagttgcgtgttgtcatatcatttgatggatcttat
gtgaattaccgccatctggctatcctatgtgataccatgacatatcgtggtcacttgatg
gccattacacgtcatggtatcaacaggaatgataccggcccaatgatgcgttgttcattc
gaagaaacagtggatattctgcttgatgcatctgtgtttgcagaaacagatcatctgagg
ggtgtgactgaaaatataatgttagggcagctggcaccaattgggactggagactgtgcg
ctgtatctcaatgatgagatgctaaagaatgccattgaactgcagctgcctagttatatg
gatggccttgattttggcatgacaccatcccgttctccagtgtcgggaaccccatatcgt
gatggaatgatgtcacctaattatctgctgagcccaaatatgcgaatgtctcccatgtca
gatgctcagttttctccctatgtcagtggaatggcattctctcctacttcatctccaggt
tacagcccatcatctcctggatacagtccgtcctctcctgggtacagccccacgtcccct
ggttatagtcccacctcgccgggttacagccccacgtctcctggttatagtccgacttct
ccaacttatagtccgagctctccaggttatagtccaaccagcccggcatattctcctaca
agtccgtcttacagccccacctctccaagctacagccccacatctccaagctacagtccc
acctctccaagctacagccccacctccccaagctacagccccacctcccccgcttacagc
cccacttcccccgcttacagccctacttccccggcttacagcccaacatccccatcatac
agcccgacgtccccttcatacagcccgacatccccttcatacagccccacgtccccttca
tacagcccaacatcccctgcctatagcccaacttcacctggttacagcccaacttccccg
agttatagtccaacctctcctagttatagccctacctctccgagttataatcctccttct
gcaaaatatagcccgtcggtggcgtactctccgagcagtccaagattgtcaccagccagc
ccatacagtcctacctctccaaattacagccccacgtcaccgtcatattcacccacatca
ccatcttattctccctctagcccctcatacactcctggcagcccatataccgctggagtg
agccccgattacagcccaagttctccacagtacagtccaagtgctgggtactcacccagt
cagccagggtactccccatcatccactggccagtacactccgcaaacaagtgaaaagggt
gataaagatgacaggagcactcgctaa
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integrated database retrieval system
