Comamonas antarctica: HUK68_17760
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Entry
HUK68_17760 CDS
T07217
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aant
Comamonas antarctica
Pathway
aant03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aant00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUK68_17760 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aant03021
]
HUK68_17760 (rpoC)
03400 DNA repair and recombination proteins [BR:
aant03400
]
HUK68_17760 (rpoC)
Enzymes [BR:
aant01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUK68_17760 (rpoC)
Transcription machinery [BR:
aant03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUK68_17760 (rpoC)
DNA repair and recombination proteins [BR:
aant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUK68_17760 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
DUF496
Motif
Other DBs
NCBI-ProteinID:
QKV54586
UniProt:
A0A6N1X9T2
LinkDB
All DBs
Position
complement(3829673..3833899)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKM
GAEGIKDLLESIDIEIEIDKLRNDLTGSEVKIKKNAKRLKLLEAFKKSGIKPGWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYHATRERINGKGEGMVFADIGEVQRALDADQV
ELAAKINVRLTEWTKNKATGEFEPETKLVETTVGRALLSEILPKGLPFSNMNKALKKKEI
SKLINTSFRKCGLKATVVFADKLLQNGFRLSTHAGISIAIGDMLVPPQKAEIIGRAEAEV
KEIQQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAQLAKEKVIDRHGNEVDQESFNA
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTTNGTLMRAIVEGGEVIESLRDRVLG
RTTAEDVLSPETRAVVVPAGTLLEEDTIEGMEAAGVDEVKVRTALTCETRYGLCACCYGR
DLGRGGQINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGLIGFN
PTMRYVTNTRGELVVISRSGEIIIQDEHGRERERHKVPYGAILTIKADQTIKAGTILANW
DPLTRPIITEYAGSVKFENVEEGLTVAKQLDEVTGLSTLVVIDPKRRGSTKVVRPQVKLI
DASNQEVKIPGTDHSVTIGFQVGALIQVRDGQEVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDLEGKVSEELVPKERNILVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGESTYIAGEQVERSEILNTNETLLAEGKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDAMDDAERRA
IAEAEAAELAGIIEEGADTVSVNDSSAD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctgctcgacctattcaagcaattcacgccggatgagcatttcgatgccatc
cgcatcggcatggcttcgcccgagaagatccgttcgtggtctttcggcgaagtgaagaag
cccgagaccatcaactaccgcacgttcaagcccgaacgcgacggcctgttctgcgccaag
atttttggtcccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactacgacgccaagcgcaaggaatacggcgacgagttcatcgccaagatg
ggcgccgaaggcatcaaggacctgctggagtcgatcgacatcgagatcgagatcgacaag
ctgcgcaacgatctgacgggttccgaagtcaagatcaagaagaacgccaagcgcctgaag
ctgctcgaggccttcaagaagtcgggcatcaagcccggctggatggtgctcgaagtgctg
cccgtgctgcctccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacagccgcctgcgccgtctg
ctggaactgaaggcaccggaaatcatcgcgcgcaatgaaaagcgcatgctgcaggaagcc
gtcgacagcctgctggacaacggccgccgtggcaaggccatgacgggcgcgaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaacctg
ctgggcaagcgcgtggactactccggtcgctccgtgatcaccgtgggcccatacctcaag
ctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaagcccttcatcttc
tcgcgtctcgaagccatgggcatcgcgacgacgatcaaggcggcgaagaaggaagtcgaa
tccggcacccccgtggtctgggacatcctggaagaggtcatcaaggaacacccggtgatg
ctcaaccgtgcgcctacgctgcaccgtttgggtatccaggccttcgagcccatcctgatc
gaaggcaaggccatccagctgcaccccctcgtctgcgcggcgttcaacgccgacttcgac
ggtgaccagatggctgtccacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggcgaaccgtcgatcgtgccg
tcgcaagacgtggtgctgggcctgtaccacgccacccgcgagcgcatcaacggcaagggc
gaaggcatggtcttcgccgacatcggtgaggtgcagcgcgcgctcgacgccgaccaggtc
gaactggcggcgaagatcaacgtgcgcctgacggaatggaccaagaacaaggcgacgggc
gaattcgagcccgaaaccaagctcgtggaaaccaccgtcggccgtgcgctgctgtcggaa
atcctgcccaagggcctgccgttcagcaacatgaacaaggcgttgaagaagaaggaaatc
tccaagctcatcaacacctcgttccgcaagtgcggcctgaaggcaaccgtcgtgtttgcc
gacaagctgctgcaaaacggtttccgcctgtcgacgcacgccggcatctcgatcgccatc
ggcgacatgctggtgccgccgcaaaaggccgagatcatcggccgtgccgaagccgaagtg
aaggaaatccagcagcagtacgtctcgggtctggtgacctcgggcgaacgctacaacaag
gtggtggacatctggggcaaggccggtgacgaagtctccaaggtcatgatggcccagctg
gccaaggaaaaggtcatcgaccgccacggcaacgaagtcgatcaggaatcgttcaacgcg
atttacatgatggccgactccggcgcccgcggctccgcggcccagatccgccagctcgcc
ggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgcccattaccgcg
aacttccgcgaaggcctgaacgtgttgcagtacttcatctccacccacggtgcccgcaag
ggtctcgcggatacggcgctgaaaacggccaactcgggttacctgacgcgtcgcctggtc
gacgtgacgcaggatctggtcgtgaccgagcaggattgcggcaccaccaatggcacgctg
atgcgcgccatcgtcgaaggcggtgaagtcatcgaatcgctgcgcgaccgcgtgctgggc
cgtaccacggccgaggacgtgctgagccccgagacgcgcgccgtcgtggtgcccgcgggc
acgctgctcgaggaagacacgatcgaaggcatggaagctgccggcgtggacgaagtgaag
gtgcgcacggccctgacctgcgaaacccgctacggcctgtgcgcctgctgctacggccgc
gacctgggccgcggcggccagatcaacctcggcgaagccgtgggtgtgattgccgcccag
tccatcggcgaacccggcacgcagctgaccatgcgtacgttccacatcggtggcgcggct
tcgcgtgcggcgattgcctcgagcgtcgaagccaagtccaacggcttgatcggtttcaac
ccgaccatgcgctatgtgaccaacacccgtggcgagctggtggtgatttcgcgttccggc
gaaatcatcatccaggacgagcacggccgcgagcgcgagcgccacaaggtgccgtacggt
gcgatcctgaccatcaaggccgaccagaccatcaaggctggcacgatcctggcgaactgg
gatccgctgacccgaccgatcattaccgagtacgccggtagcgtgaagttcgagaacgtc
gaagaaggcctgacggttgccaagcagctcgacgaagtgaccggtctgtccacgctggtg
gtgatcgatccgaagcgccgcggctcgaccaaggtggttcgtccccaggtcaagctgatc
gacgcgagcaaccaggaagtcaagatccccggcaccgaccattcggtgacgatcggcttc
caggtgggcgcgctgatccaggtgcgcgacggccaggaagtgggccccggcgaagtgctg
gcccgtattccggtcgaaggccagaagacgcgcgacattaccggtggtctgccccgcgtt
gccgagctgttcgaagcccgtacgccgaaggacaagggcacgctggcagaaatgaccggc
acggtgtcgttcggcaaggaaaccaagggcaaggtccgcctgcagatcaccgatctcgaa
ggcaaggtctccgaagagctggtgccgaaggagcgcaacatcctggtgcacgaaggccag
gtggtgaacaagggcgaactgatcgtcgacggcccggccgatccgcaggacatcctgcgc
ctgctgggtatcgaggaactgtcgcgctacatcgtggacgaagtccaggacgtgtaccgc
ttgcagggcgtgaagatcaacgacaagcacattgaagtgatcgtgcgccagatgctgcgc
cgcgtcgtggtcgagaaccccggtgagtcgacctacatcgccggcgaacaggtcgagcgc
tcggagatcctcaacaccaacgaaacgctgctggccgaaggcaagatcccggcaacgtac
tcgaacgtgctgctgggtatcaccaaggcgtcgctgtcgaccgattcgttcatctccgcg
gcttccttccaggaaaccacgcgcgtgctgaccgaagcggcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgattcccgcaggtaccggc
ctggcctaccatcaggcacgcaaggccaaggatgcgatggacgacgccgagcgccgcgcc
attgccgaagccgaagccgccgagctggccggcatcatcgaagaaggcgccgacacggtg
tccgtcaacgattcttccgccgattaa
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integrated database retrieval system
