Aggregatibacter actinomycetemcomitans ANH9381: ANH9381_0250
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Entry
ANH9381_0250 CDS
T01651
Name
(GenBank) cold-shock deAd box protein a
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aao
Aggregatibacter actinomycetemcomitans ANH9381
Pathway
aao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ANH9381_0250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aao03019
]
ANH9381_0250
03009 Ribosome biogenesis [BR:
aao03009
]
ANH9381_0250
Enzymes [BR:
aao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ANH9381_0250
Messenger RNA biogenesis [BR:
aao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ANH9381_0250
Ribosome biogenesis [BR:
aao03009
]
Prokaryotic type
rRNA helicases
ANH9381_0250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEW76286
LinkDB
All DBs
Position
complement(218238..220025)
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AA seq
595 aa
AA seq
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MTFMDLGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL
AKIDPNEKHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQG
AQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTAL
FSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRFLEVEDF
DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDVA
ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLIK
KNIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRQLLEDMFSADQSQEDIAAAMM
MLLQGKQKLILPPDPVVEKKARRERGERGDRRENPRSAERRGERKGYGTPQPMDLYRIEV
GRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQQFGKTRVLNK
QMRMSFIGEAKGERGGDNFGGKRRGGRFEDNGFKGERKFKEKTHRTFKEKREFRK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgactttcatggatttaggcttgcctgaattcatccttaatgctgtttccgatctgggt
tttcaaactccttctccgattcaacaaatttgcataccgcacttattagaagggcgtgac
gtactgggtatggcgcaaaccggtagcggcaaaacagcggcatttgcgttaccgattttg
gcgaaaattgatcctaatgaaaaacatccgcaattattggtgatggcaccgacccgtgag
ctggcaattcaggttgctgacgcctgcgaacaatttatgaaatatgccaaaggcatcaat
atcgtgaccttatatggcggtcaacgttatgacattcaattacgcgcgctcaaacaaggc
gcacaagtggtggtgggaacaccgggacgtattctggatcatattcgtcgcggcacatta
aatctggcggaactcaaagccattgtattggatgaagcggacgaaatgttgcgtatgggc
tttattgaagatgtggaaaccgtgatggcggaactgcctgaacaccaccaaaccgcctta
ttctccgccaccatgccggaaccgattcgtcgcattaccaagcgcttcatgaaagatccg
caggaaatcaaaatcaaagcgactcagcaaagtgcgccggatattgcgcaaagttgttgg
tatgtgcatggcttccgtaaaaacgatgccttattgcgtttccttgaagtggaggatttt
gatgcagcgattattttcacccgtaccaaaaccggcactttggacgtgacggaattactg
gaaaaacacggtttccgtgccgccgcattaaacggcgacatgactcaacaattgcgtgaa
caaacccttgaccgtttgcgtagtggtagtttagatattgttgttgctactgatgtggcg
gcgcgcggtattgatattgaacgtatcagtcttgtggttaactacgatattccgctggat
gccgaatcctatgttcaccgtatcggacgtaccggccgtgcaggacgctccggtcgggcg
ttattgttcgttgaaccacgtgaacgccgtttgttgcgcaatgttgagcaccttatcaag
aaaaacattgaagaagtggaactgccaaatcatgaagtgctgcaagcctgtcgtcgtaaa
aaattcaaagacaaaattaccactcagttggaacatcatgatttagagctttaccgtcaa
ttgctggaagacatgttctcggcagatcaatcgcaggaagacattgcggcggcaatgatg
atgttgttgcagggcaaacaaaaactgattctcccaccggatccggtcgtagagaaaaaa
gcccgtcgtgaacgtggtgagcgtggcgatcgtcgtgaaaatccgcgttcggcggagcgt
cgcggggaacgcaaaggctatggtacgccgcaaccgatggatttataccgtatcgaagtc
gggcgtggcgatggcgtggaagtgcgtcatatcgtcggcgccattgccaatgaaggggat
attaacagccgttatatcggccatatcaaactttatgacgattattccaccattgaattg
ccgcaaggtatgccgaaagaattgttacagcagttcggcaagacccgcgtgttgaataaa
caaatgcgtatgtctttcatcggcgaagccaaaggcgaacgaggcggcgataacttcggc
ggcaaacgtcgcggcggacgttttgaagacaacggctttaaaggcgagcgtaaatttaaa
gaaaaaacgcaccgcacttttaaagaaaaacgcgagttcagaaaataa
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