Aggregatibacter actinomycetemcomitans ANH9381: ANH9381_1892
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Entry
ANH9381_1892 CDS
T01651
Name
(GenBank) DNA-directed RNA polymerase sigma subunit RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aao
Aggregatibacter actinomycetemcomitans ANH9381
Pathway
aao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aao00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ANH9381_1892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aao03021
]
ANH9381_1892
Transcription machinery [BR:
aao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ANH9381_1892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
YL1
DUF3800
SEEEED
Sporozoite_P67
Motif
Other DBs
NCBI-ProteinID:
AEW77804
LinkDB
All DBs
Position
complement(1782400..1784250)
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AA seq
616 aa
AA seq
DB search
MDQNPQSQLKLLIAQGKEQGYLTYAEVNDSLPEELVDADQIEDIIQMINDMGIQVLETAP
DADDLMLNENITDEDVVEEATQVLSSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIA
KRIEEGINEVQSAIAAYPEAITYLIEQYDLVENGGVRLADLITGFVDPNVLTESETEELA
EDFNSEEGGDIDSESEEEEDNEGGSSDDSDSDNNVDPEIAREKFTALKQQHQKTLESIAK
HGRTAKKAKDEIQVLSDIFTQFRLVPKQFDMLVLSIRGIMKRVRGQERFIQRIVVDNAKM
PKSGFQKSFIGHETTDTWLVKALSAGKSWSEKLVQYENQLRQAITNLVQIEQDTHLTIPQ
IREIGERITQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
ASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATV
QSLKAATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSETLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccacagtctcaattgaaactactcatcgcacaagggaaagagcaaggt
tatttaacctacgccgaggtcaatgacagcctccccgaagaattagtcgatgcagatcaa
attgaagatattattcagatgattaatgatatggggattcaggtgttggagaccgcaccg
gatgccgatgatctgatgctcaatgaaaatatcaccgatgaagatgtcgttgaagaagca
acccaagtattatccagcgtggaagcagaattagggcggactaccgaccctgtacgtatg
tatatgcgtgaaatgggtagcgtagaattgcttacccgtgaaggcgaaattgatattgcc
aaacgcattgaagaaggtattaacgaagtacaaagcgccattgccgcttaccctgaagcc
atcacttacttaattgagcaatatgatttggtagaaaatggcggtgtacgcttagccgac
ttaattaccggtttcgttgatcctaatgtgctaaccgaatccgagactgaagaattggca
gaagattttaattccgaagaaggtggcgatattgatagtgaaagcgaggaggaagaagat
aacgaagggggaagtagcgatgacagtgatagtgataacaatgttgatcctgaaattgca
cgggaaaaatttaccgcacttaagcagcaacatcaaaagaccttagagagcattgcaaaa
catggtcgtacggcgaaaaaagcaaaagatgaaattcaagtgttatcagacatcttcact
caattccgcttagtaccaaaacaattcgatatgctagtgctatctatacgtggtattatg
aaacgtgttcgcggtcaggaacgtttcattcagcggattgtggtggacaatgccaaaatg
ccaaaatccggtttccaaaaaagctttataggacatgaaacaactgatacgtggttagtg
aaagccttgtctgccggtaaatcctggtcggaaaaattggtacaatatgaaaaccaatta
cgccaagccatcaccaatttggtgcaaatcgaacaagatacccatctgacgattccacaa
atccgagaaatcggtgagcgcatcacacaaggtgaattaaaagcccgtcgtgcaaaaaaa
gaaatggtagaagcaaatctgcgcttagtaatttctattgctaaaaaatacaccaatcgc
ggattacaatttcttgatcttattcaagagggtaatatcggcttaatgaaagcagtggat
aaatttgaataccggcgcggctataaattctctacttatgccacttggtggattcgtcag
gcaattacccgttctattgccgatcaagcccgcaccattcgtattccggtacatatgatt
gaaactattaataaactcaatcgtatttcccgtcaaatgctgcaggaaatgggacgcgaa
gcctcgccggaagaactggcagaacgcatgggcatgccggaagataaaatccgtaaagtg
ctgaagattgcgaaagagccgatttcgatggaaaccccaattggcgatgacgatgattcc
catttaggcgattttatcgaggattccactttagagcttccgttagattccgcgaccgtg
caaagcctgaaagcagcaacgcatgaagtactggaaggtttaaccccacgggaggctaaa
gtcttgcgtatgcgctttggtatcgacatgaataccgatcatactttagaagaggtgggt
aaacaatttgacgtaacccgtgaacgtattcgccaaatcgaagccaaagcgttacgtaaa
ctgcgccatccaagccgttccgaaactttacgcagctttctggatgagtaa
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