Aggregatibacter aphrophilus NJ8700: NT05HA_0563
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Entry
NT05HA_0563 CDS
T00929
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aap
Aggregatibacter aphrophilus NJ8700
Brite
KEGG Orthology (KO) [BR:
aap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aap03019
]
NT05HA_0563
Enzymes [BR:
aap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NT05HA_0563
Messenger RNA biogenesis [BR:
aap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NT05HA_0563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
ResIII
AAA_30
T2SSE
nSTAND3
NACHT
AAA_25
TsaE
Motif
Other DBs
NCBI-ProteinID:
ACS96976
LinkDB
All DBs
Position
563578..567579
Genome browser
AA seq
1333 aa
AA seq
DB search
MKNKSVKREVTSLQQSLFSQLNDIMRVDQRRLSARIHGIGKIKSQEAQQTVADEIQQQIE
QARLRVESRKSGVKNPIVFPESLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKMC
LELGLGNLGIIGHTQPRRIAARSVAARIAEELQTELGDLVGYKVRFNDQISDNTQIKLMT
DGILLAEIQTDRFLNQYSCLIIDEAHERSLNNDFIFGYLKQLLPRRPDLKVIITSATIDV
ERFSKHFNHAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFM
NGEREIRDTAEALQKQNLKHTEILPLFARLSAQEQNKIFHPSGLNRIVLATNVAETSLTV
PGIKYVIDPGTARISRYSYRTKVQHLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDF
NNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLLEELGAIQP
KKYKSRDGARLPTRAPNLTDESTRQETRASESTEKKQGWELTPIGRQLAQLPVDPRLAKM
LLSAVDFGSVYEVMIIVSALSIQDPRERPTDKQQASDEKHRRFADKKSDFLAFLNLWNYV
QAQQKELTKNQFRRQCQKDFLNYLRIREWQDIYQQIRLTVREMGLPINSEKAEYQQIHTA
LLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWGRMVA
EIEPEWIEPLAEHLTKKSYSEPRWSKSRGAVIADEKVSLYGVPIVAMRPVNYGSIDPTVS
REIFIQSALVEGDWNTKHKFFKQNQQLIREVEELEHKSRRRDILVDERTLFEFYDQRIGT
DVVSQKHFDTWWKKAEKQDPELLNFERSFLINDDAEQVSKLDFPSSWHQGNLKLKLTYQF
EPGTDADGVTVHIPLPLLNQVEMTGFDWQIPGLREELVIALIKSLPKSYRRNFVPAPNYA
QAFLGRAVPLEKPLLDTLIHELRRMTGVTVAAEHWNWEQIPSHLKMTFRVVDENGKKIAE
SMNLDELKFSLKDRVQESISAVADDGIEQSGVHIWSFAELPQCYEQKQRGFSVKAFPAIV
DEKDAVGIKLFETEFEQAVAMQQGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFTPFGRV
LDLIDDCIACAVDKLIADFGGFVWNEEGFDKLRDFVRENVNEVTVDIAQKVEQILTLTHQ
LNQRLKGKMDFTMAFALSDMKSQITGLIYQGFVQKSGYARLPDLLRYLQAIDKRMDKLAQ
DINRDRAAMLRVEQVQQAYQQLLAKLPKSKPISDEVAEIRYMIEELRVSLFAQQLGTKYQ
VSDKRVLNVVNSI
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaatccgtaaaacgtgaagtaacctctttacagcaatcccttttttctcag
cttaacgacatcatgcgggtggatcaacgccgtttatctgcccgcattcacggcatcggc
aaaattaaaagccaagaagcgcagcaaaccgttgcagatgaaatccaacagcaaattgaa
caagcaagattacgtgtagaaagccgtaaaagtggggtcaaaaatccgatcgtttttccg
gaaagcctgccggttagccaacgcaaagcagaaattgaaaaactgctttccgagcatcaa
gtgatcgtggtggcgggggaaaccggttcgggtaaaaccacccagttgccgaagatgtgt
ttggaactcggcttaggtaatcttggcataatcggacacacccaaccgcgccgtattgcg
gcacgttctgtggcggctcgaattgcggaagaattgcaaacagagcttggcgatttagtg
gggtataaagtccgttttaacgatcaaatcagtgacaacacccaaatcaagttgatgacg
gacgggattttgctggctgaaattcaaacggatcgtttcctcaaccaatattcttgtctg
attatcgatgaggcccacgaacgtagcttgaacaacgattttattttcggttatctgaaa
cagctgctgccgcgtcgtcctgatttaaaagttattatcacctcggctaccattgacgta
gaacgtttttctaaacatttcaatcatgcgccgattatcgaagtctcgggcagaacttat
cccgtggaagtgcgttatcgacctgttgtagaggaagacgatcaagatcagctacaaggt
attcttaatgcggtggatgaactgcaagcagaagggcgtggcgatattttgatctttatg
aacggtgaacgggaaattcgtgacaccgccgaagccttacaaaagcaaaatctaaaacac
acggaaatcctaccactctttgcccgcttgtcggcgcaagaacaaaataaaattttccat
ccgagcggtttaaatcgcattgtgttagccaccaacgtggcagaaacctcgctcaccgtg
ccgggcattaaatatgtgattgaccccggcacggcacgcatttctcgttatagttaccgc
accaaagtgcaacacttgccgattgagcccatttcacaggcctccgccaatcagcgaaaa
ggacgttgcggacgggtgagcgaaggcatttgtattcgtctttattcggaagaggatttt
aacaatcgcccggaatttaccgatccggaaatcctgcgtaccaatttggcttccgtcatt
ttgcaaatgacagcgttaggtttagacgacattgaagcatttccttttgtcgatgcgccg
gataaacggcacattcaagacggcgtgaagttgttggaagagttgggagcgattcaacct
aaaaaatataaatctcgtgatggcgcgcgtctcccgacgcgtgccccaaatttgacagat
gaaagcacgcgtcaggagacgcgcgctagcgaatcgacagagaaaaaacaagggtgggaa
cttaccccaatcggtcgccaacttgcccaactcccggtcgatccacgccttgccaaaatg
cttctaagtgcggtcgattttggcagcgtttatgaggtgatgattattgtctcggcgtta
tccattcaagatccgcgtgaacgtccgacagacaaacaacaggcttccgatgaaaaacat
cgccgttttgccgataaaaaatcggatttcttagcattcttgaacctttggaattatgta
caagcacagcaaaaagaattaacgaaaaaccaatttcgccgccaatgtcaaaaggatttt
ttaaattatttgcgtattcgcgaatggcaggatatttatcaacaaattcgccttaccgtg
cgtgaaatgggcttgccgattaattctgaaaaagcagaatatcaacaaattcacaccgca
cttttaagcggtttgctgtcgcatattggcttaaaagaagcagaaaagcaacaatatctt
ggcgcccgcaatgcgcattttgcgattttcccaaattccgtgcttttcaaaaaacaaccg
aaatgggtgatggcggcagagttggtggaaacctccaaactttgggggcgtatggtagcg
gaaattgagccggaatggattgagccgctcgccgagcatttaacgaaaaaatcctattcc
gagccgcgttggtcgaaatctcgcggggcagtgattgctgatgaaaaagtgagcctgtat
ggcgtgccgattgtagccatgagaccggtaaattatggctccattgacccaacggtgagc
cgtgagatctttattcaatccgccttggtagaaggggattggaacaccaagcataaattc
ttcaagcaaaatcagcagctgattcgtgaagttgaggaattagaacataaaagccgtcgc
cgcgatattttggtggacgagcgcaccttatttgagttttacgatcagcgtatcggcacg
gacgtggtgtcgcaaaaacattttgatacttggtggaaaaaggcggaaaaacaagatcct
gaactgcttaattttgaacgctctttcttgattaacgatgatgcggaacaagtgagcaag
ctggattttccgagttcctggcaccaaggcaatctgaaactcaaactgacctatcaattt
gaaccgggcacggatgcggacggcgtgaccgtgcatattccgttgccgttgctcaaccaa
gtggaaatgacgggctttgattggcaaattccgggcttgcgggaagaactggtgattgcg
ctgattaagtctctgccgaaatcttaccgtcgtaatttcgtgccggcaccgaattatgcg
caagcctttttagggcgtgccgtgccgttggaaaaaccgttgttggatacgttgattcat
gaattgcgtcgtatgacgggcgtcaccgtagcggcggaacattggaattgggaacaaatt
ccaagccatttgaaaatgaccttccgcgtggtggatgaaaacggcaagaaaattgccgaa
tccatgaatttggacgagctgaaatttagcttaaaagaccgtgtgcaagaaagcatttct
gcggtggcggacgatggtattgaacaaagcggagtgcacatttggagttttgcggagttg
ccacaatgttacgaacaaaagcagcgtggtttcagtgtgaaagcctttcctgccattgtg
gacgaaaaagacgcagtgggcattaaactgtttgaaacggaatttgaacaagcggtggca
atgcaacaggggttacgccgattgttgctgctcaacgtaccatcaccgattaaatatcta
catgaaaaattgccgaataaagctaaattggggctctattttacgccgtttggacgcgta
ctggatttaattgacgactgcattgcctgtgccgtagataaactgatagccgattttggc
ggctttgtgtggaacgaagaaggctttgataagctacgggattttgtgcgtgaaaacgtc
aatgaagtcaccgtggatattgcgcaaaaagtggagcagatcctgacgctcacacaccag
ctcaaccagcgcctcaaaggcaaaatggatttcaccatggcgttcgccctgtccgatatg
aaaagccaaatcaccggtttgatttatcaaggcttcgtgcaaaaaagcggctacgcccgc
ctgccggatttactccgttatctgcaagccatcgacaaacgcatggataaactcgctcaa
gatatcaatcgtgatcgcgccgctatgctacgtgtggaacaggtgcaacaggcttaccaa
caattgcttgccaaactgccaaaatccaaaccgatttcggatgaagtggcggagattcga
tatatgattgaggaattgcgtgtgagtttatttgcgcagcagttggggacgaagtatcag
gtgtcggataagcgggttttgaatgtggttaatagtatataa
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