Aggregatibacter aphrophilus NJ8700: NT05HA_1458
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Entry
NT05HA_1458 CDS
T00929
Name
(GenBank) cold-shock deAd box protein a (atp-dependent rna helicasedead)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aap
Aggregatibacter aphrophilus NJ8700
Pathway
aap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT05HA_1458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aap03019
]
NT05HA_1458
03009 Ribosome biogenesis [BR:
aap03009
]
NT05HA_1458
Enzymes [BR:
aap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NT05HA_1458
Messenger RNA biogenesis [BR:
aap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NT05HA_1458
Ribosome biogenesis [BR:
aap03009
]
Prokaryotic type
rRNA helicases
NT05HA_1458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACS97801
LinkDB
All DBs
Position
complement(1462968..1464770)
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AA seq
600 aa
AA seq
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MTETKMTFADLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAF
SLPILAKIDPAEKHPQLLVMAPTRELAIQVADACEHFVKYAKGINVVTLYGGQRYDIQLR
ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH
HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGLRKNDALLRFL
EVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVV
ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNV
EHLIKKNIEEVKLPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDI
AAAMMMLLQGKQKLILPPDPVVDKKARRDRGERGDRRENPRSAERRGERKGYGNPQPMDL
YRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQQFGKT
RVLNKQMRMSFIGEAKGDRGGDNFGAKRHGGRFKEKGFKGDRKFKEKSHRTFKEKREFRK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaactaaaatgactttcgcggatttaggcttgcctgaattcatccttaatgct
gtttccgatcttggctttgaaacaccttcgccaattcaacaaatttgtataccgcactta
ttagaaggccgtgatgtactgggcatggcgcaaaccggtagtgggaaaaccgctgcgttt
tctttaccgattttggcaaaaattgatccggctgaaaaacacccgcaattattggtgatg
gcgccgactcgagaattggcaattcaagttgccgatgcatgcgaacactttgtgaaatat
gctaaaggtattaacgtcgtcaccctatatggcggccaacgttatgacatccaattacgt
gcgttaaaacaaggtgcacaagtcgtggtggggacaccaggacgtattttggatcatcta
cgccgtggaaccttaagtcttgctgagcttaaagcgatcgtgttagacgaagcggacgaa
atgttgcgcatgggctttattgatgatgtagaaaccgtgatggcagaattaccggaacat
caccaaactgcacttttctctgccacaatgccggagccgattcgtcgaatcaccaaacgc
tttatgaaagatccgcaagaagtcaaaattaaagcgacccaacaaagtgcaccggatatt
gcgcaaagctgttggtatgttcatggtttgcgtaaaaatgacgctttattacgtttcctg
gaagtggaagatttcgatgcggcgattattttcacccgtaccaaaaccggcacgttagac
gtgaccgaattattagaaaaacacggtttccgtgcggcggcattgaatggcgatatgact
caacagttacgcgaacaaaccttagatcgtttacgtagtggcagtttagatattgttgtg
gcgacagacgtagcggcgcgtggtattgatattgaacgtattagccttgtggtgaattat
gatatcccgctcgatgcagaatcttatgtacaccgtatcggtcgtaccggccgtgcagga
cgttctggtcgtgcgttattattcgtggaaccgcgtgagcgtcgtttgttgcgtaatgtt
gaacacctgatcaagaaaaatattgaagaggtgaaattgccgaatcatgaagtcttacaa
gcctgtcgtcgtaaaaaattcaaagataaaattaccacgcagttggaacaccatgattta
gagctttatcgtgaattgttggaagatatgtttactgccgaccaatcacaagaagacatt
gcagccgctatgatgatgttgctacaaggcaaacaaaaactgattcttccgccggatccg
gtggtggataaaaaagcccgtcgtgatcgtggcgagcgcggtgatcgtcgtgaaaatcca
cgttcggcagaacgtcgtggtgaacgtaaaggttatggcaatccgcaaccgatggattta
tatcgcattgaagttggtcgtggtgacggtgtggaggtgcgccacattgtcggtgccatt
gctaatgaaggcgatattaacagtcgctacattggccacattaaactttatgacgactat
tccactatcgaattgccacaaggcatgccgaaagaattgttacaacaatttgggaaaacc
cgtgtgttgaataaacaaatgcgtatgtcctttatcggcgaagcgaaaggtgaccgcggc
ggtgacaatttcggcgctaaacgccacggaggccgttttaaagaaaaaggcttcaaaggc
gatcgtaaatttaaagaaaaatctcaccgcacttttaaagagaaacgagagtttagaaag
taa
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