Apilactobacillus apisilvae: MOO46_03530
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Entry
MOO46_03530 CDS
T08479
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aapi
Apilactobacillus apisilvae
Pathway
aapi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aapi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MOO46_03530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aapi03021
]
MOO46_03530 (rpoC)
03400 DNA repair and recombination proteins [BR:
aapi03400
]
MOO46_03530 (rpoC)
Enzymes [BR:
aapi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MOO46_03530 (rpoC)
Transcription machinery [BR:
aapi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MOO46_03530 (rpoC)
DNA repair and recombination proteins [BR:
aapi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MOO46_03530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UQS85640
UniProt:
A0ABY4PIG4
LinkDB
All DBs
Position
complement(671350..675009)
Genome browser
AA seq
1219 aa
AA seq
DB search
MVDVNKFSSMQIGLASSDKIRSWSFGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
SPRALEEIIYFASYVVTDPGDTPLENKQLMSEQDYRQKKQEYGNRFEGKIGAEAIRTLLN
NVDVKKEVAELKDQLKKATGQKRVRAVRRLDILESFVQSGNDLTWMIMEAIPVVPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKFNQMGLPVP
MALELFKPFVMKELVSREIASNIKSAKRQIERKDEEVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAESRLLMLAATHIL
APRDGNPIVTPSQDMVIGNYYLTMEEAGREGEGMIFNTPEEAKLSYQSGLTHWHTRVGIA
AKSMPNKPFTDEQRDKILVTTIGKIIFNGILPSSFTYLNEPTDTNLHGHLSDKFFLEPGE
DIHEHLKNAPINGSFKKGFLSDIIAEVYKQYKVTETSHLLDKIKDLGYNESTKSGLTVGI
TDVTDLKEKPEIITESHKKVDNVTKQFRRGLITDHERYERVIGIWSDAKDDIQNKLMESF
DPQNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGEIMELPITANFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCGTDRGVIVTALKQGNEMIEPLY
DRILGRYAMKTIKNPETGEVIVKHNQMINEPEAQAIMDADIKEVEIRSAFTCNTVHGVCE
KCYGRNLATGSPVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNADITQGLPRVQEI
FEARNPKGKAEISEVTGTVDLIEENPAERVKEVTIKGDSDTRTYKVPINARMNVVEGDFI
RRGGAINEGSIDPKELIKVRDSLSTEVYLLSEVQKTYRMQGVEVSDKHAEIMVRQMLRKV
RIMDAGDTDVLPGTLMDIDDFKNANADAVISGKIPATSRPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKLIPAGTGMKTYGRIEPEVEGKAKDNSSED
VYSISEIDERMNPEDVNNK
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgtaaataaattttcaagcatgcaaatcggtttagcatcttctgacaagatt
cgtagttggtcatttggtgaagttaaaaaaccagaaaccattaactatagaactctaaaa
ccagaaaaagatggtttattcgatgaaagaattttcggtccaactaaagactgggaatgt
gcttgtggtaaatataaacgtattagatataagggtatcgtttgtgatcgctgtggagtt
gaagttactcgttcaaaagtacgtcgtgaacgtatgggacacattgaattagctgctcca
gttactcatatttggtactttaaaggtattccaagtcgtatgggacttattttagatatg
agtcctcgtgcattggaagaaattatctactttgcatcatacgttgttactgatcctggt
gatacaccactagaaaataaacaacttatgtcagaacaagactatcgtcaaaagaaacaa
gaatatggtaaccgttttgaaggtaagattggtgctgaagctataagaaccttacttaac
aatgttgatgttaagaaagaagttgctgaattaaaagaccaattaaagaaagctaccggt
caaaaacgtgttcgtgctgttagaagactagatattcttgaatcattcgttcaatcaggt
aatgatttaacttggatgattatggaagcaattccagttgttccacctgacttaagacct
atggttcaacttgaaggtggccgttttgcgacttctgatttgaacgatttatatcgtcgt
gttattaaccgtaataaccgtttgaagcgattattagatttacatgctcctggtatcatc
gttcaaaatgaaaaacgtatgctacaagaagctgttgatgctttgattgataatggtcgt
cgtggtcgtccagttgccggaccaggtaatagacctttgaagtcactttcacatatgcta
aaaggtaagcaaggtcgtttcagacaaaacttacttggtaaacgtgttgactattctggt
cgttcagttattgatgttggaccattcttgaaatttaaccaaatgggactaccagttcca
atggcacttgaattattcaagccatttgttatgaaagaactagtttctagagaaattgca
tcaaatattaaatcagctaaacgtcaaattgaacgtaaagatgaagaagtttttgatgta
ttagaagatgttattaaagaacatccagttctattaaaccgtgcacctactcttcataga
cttggaattcaagctttcgagccagttttagtttcaggtaaagcaatgcgtcttcatcca
ttagcttgtgaagcttacaatgccgattttgatggggaccaaatggctattcatgttcct
ttatctgatgaagctcaagctgaatcaagactattgatgttagctgctactcatattttg
gcacctcgtgatggtaatccaattgttacaccatctcaagatatggttattggtaactac
tatttaactatggaagaagctggacgtgaaggtgaaggtatgatcttcaatactccagaa
gaagctaagttatcatatcaaagtggtttgactcattggcatactcgtgttggaattgct
gctaagtcaatgccaaataaaccatttacagatgaacaaagagacaaaattttagttact
actatcggtaagattatttttaatggtattcttccaagttcatttacttacctaaatgaa
cctacagatactaatttacatggtcatttatctgacaagttcttcttagaacctggtgaa
gatattcatgaacatttaaagaatgctccaattaatggatcattcaaaaaaggtttctta
tcagatattattgctgaagtttacaagcaatataaagtaactgaaacttcacatttatta
gataagattaaagatttaggttacaatgaatcaactaaatcaggcttaactgttggaata
actgacgttactgatttaaaagaaaagcctgaaattattactgaatctcataaaaaagtt
gataatgttactaaacaattccgtcgtggtttgattactgatcatgaacgttatgaaaga
gttattggtatctggagtgatgctaaggatgacattcaaaataaattgatggagagtttt
gatcctcaaaaccctatctttatgatgagtgattctggtgctcgtggtaacatttcaaac
tttactcaacttgctggtatgcgtggattgatggccgctcctaatggtgaaatcatggaa
ttacctattactgctaacttccgtgaaggattatctgttttggaaatgtttatttctacc
cacggtgctcgtaaaggtatgaccgatactgctttgaagactgccaactcaggttactta
actcgtcgtttagttgatgttgctcaagatgttattattcgtgaagaagattgtggtact
gatcgtggtgttattgttactgccttgaaacaaggtaatgaaatgatcgaacctctttac
gatagaattcttggtcgttacgcaatgaagactattaagaatcctgaaacaggcgaagtt
attgttaaacataaccaaatgattaatgaacctgaggctcaagctattatggatgccgat
attaaagaagttgaaattcgttcagcatttacttgtaatactgttcacggggtttgtgaa
aaatgttatggtcgtaacttggcaaccggttctcctgtagaagttggagaagctgttggt
acagttgctgcccaatcaattggtgaacctggtactcagttaactatgagaaacttccat
accggtggtgttgctggtaatgctgatattactcaaggacttcctcgtgttcaagaaatt
tttgaagctagaaatcctaaaggtaaagcagaaatttctgaagttacaggtacagttgac
ttaattgaagaaaaccctgctgaaagagttaaagaagtaactattaaaggtgattctgat
actagaacttacaaagttccaatcaatgcacgtatgaatgttgttgaaggtgacttcatt
cgccgtggtggagcaattaatgaaggttctatcgatcctaaagaattaattaaagttcgc
gattcattatcaactgaagtttacttgctaagtgaagttcaaaagacttaccgtatgcaa
ggggtggaagttagtgataagcatgccgaaatcatggttcgtcaaatgctacgtaaagta
agaatcatggatgctggtgatactgatgttcttcctggaacattaatggatatcgatgac
tttaagaatgctaatgcagatgcagttatctctggtaaaattccagctacatcacgtccg
gtaatcttaggaattactaaagccgctctagaaactaacagtttcttatcagctgcttca
ttccaagaaactactcgtgtattgactgatgctgctattcgtggtaagaacgatccatta
gttggtctaaaggaaaatgttattattggtaagttaattcctgctggtactggtatgaag
acttatggtcgtattgaaccagaagttgaaggtaaggcaaaggataatagttcagaagat
gtttattcaattagtgaaattgatgaacgtatgaatcctgaagatgtaaataataaatag
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