Apilactobacillus apinorum: AAPFHON13_07530
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Entry
AAPFHON13_07530 CDS
T09617
Name
(GenBank) recQ ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aapn
Apilactobacillus apinorum
Pathway
aapn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aapn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAPFHON13_07530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aapn03019
]
AAPFHON13_07530
03400 DNA repair and recombination proteins [BR:
aapn03400
]
AAPFHON13_07530
Enzymes [BR:
aapn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAPFHON13_07530
Messenger RNA biogenesis [BR:
aapn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAPFHON13_07530
DNA repair and recombination proteins [BR:
aapn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AAPFHON13_07530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
AAA_22
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
CAI2674166
LinkDB
All DBs
Position
1:complement(826695..828140)
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AA seq
481 aa
AA seq
DB search
MIDDISLKSNLKKWFGYAEFRSGQLDVIKALIQKEDTLAVLPTGTGKTLIYQYMGKLNEG
TVIIVSPLISLMQDQVDRMRFLGEKRTIALNSSLNWYEKKKITKNLASYKYIYISPEMLS
NDEILDNLKKINISLFVVDEAHCINQWGPDFRPEYLNLKRIISFLGSPLTLLLTATASNE
VIDDIKNKIGIVNLNVIKYSANRPNIALDVEIIDDLNEKNERLLSLVNKVKKPGIIYFSS
KKVANSVCRWLNDQTNLSVEAYHADIDNDSRYKIQHQFINDKIDVICATSAFGMGIDKDN
IRFVIHYHMPSNLESYVQEMGRAGRDGEQSISYILYREKDEILQYRFIDEAIPTEDMIDF
FYRNSKSLLKANLDEKGDLVRYYFEKGYELDETKSIFYNRRNELIASLNDMIEYVHSNGC
YRQKLLNHFNEDFNNHDNQCCNGMQTELKLDHMNLISTNKDIKSGEKKEKWQNIIQSLFS
N
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgatattagtttaaagagcaatttgaagaaatggtttggatatgctgagttt
agatctggacaattagatgtaattaaagcgctaattcaaaaagaagatactttagcagta
ttgcctacaggaacaggaaaaacactaatatatcaatatatgggaaagcttaatgaaggc
actgtcataatagtttctccattaatatccttgatgcaagatcaagttgatagaatgcgt
tttttaggcgaaaagagaacaattgctttaaattccagtttgaattggtatgagaagaaa
aaaatcactaagaatttagcaagttataaatatatttatatatctccagaaatgttatca
aatgatgaaattcttgataatttaaaaaagataaacattagtttatttgttgtggatgaa
gcacattgtatcaatcaatggggacccgattttagaccggagtatctaaatttaaagaga
atcatatcttttttaggatcgccattaactttacttttaacagctacagcctcaaatgaa
gtcattgatgatataaagaataagataggaattgttaatttgaacgtgattaagtattca
gctaatagacctaatattgcgctagatgttgaaataattgatgacctaaatgaaaaaaac
gagcgattattatctttggtgaacaaagtgaaaaaaccgggaattatatatttttctagt
aaaaaagtagctaattcagtttgcagatggctgaatgatcaaactaatttatcagtggaa
gcgtatcatgccgacatagataatgatagtagatataaaattcaacatcagtttatcaat
gataagattgatgtaatttgtgcaacaagtgcgtttggaatgggaattgataaagataat
attagatttgtaattcattatcatatgccatctaatttggagtcttatgtacaagaaatg
ggtagagctggtagggatggagaacaaagcatatcttatattctttatcgagaaaaagat
gaaatattacaatatcgatttattgatgaagctataccaacggaagatatgattgacttc
ttttatcgcaatagtaaaagccttttaaaagccaacttagatgaaaaaggagatttagtt
cgttattactttgaaaaaggatacgaattggatgaaactaagtctattttttacaatagg
agaaatgaacttattgcatcattaaatgacatgatagaatatgtacattcgaatggttgt
tatagacaaaagttactcaaccattttaatgaggatttcaataatcatgataatcaatgt
tgtaatgggatgcagacagaattaaaattagaccatatgaatttgatttccactaataaa
gatattaaatctggtgaaaaaaaggaaaaatggcagaatattatacaatctcttttttct
aattag
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