Apilactobacillus apinorum: AAPFHON13_11410
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Entry
AAPFHON13_11410 CDS
T09617
Name
(GenBank) Rad3-related DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
aapn
Apilactobacillus apinorum
Pathway
aapn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aapn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AAPFHON13_11410
09124 Replication and repair
03420 Nucleotide excision repair
AAPFHON13_11410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aapn03021
]
AAPFHON13_11410
03036 Chromosome and associated proteins [BR:
aapn03036
]
AAPFHON13_11410
03400 DNA repair and recombination proteins [BR:
aapn03400
]
AAPFHON13_11410
Enzymes [BR:
aapn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
AAPFHON13_11410
Transcription machinery [BR:
aapn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AAPFHON13_11410
Chromosome and associated proteins [BR:
aapn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
AAPFHON13_11410
DNA repair and recombination proteins [BR:
aapn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AAPFHON13_11410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
Helicase_C
ResIII
HBB
PhoH
Fiber_head_BAdV-4
AAA
Motif
Other DBs
NCBI-ProteinID:
CAI2687368
LinkDB
All DBs
Position
1:1181589..1183988
Genome browser
AA seq
799 aa
AA seq
DB search
MITNSITSGGDRINHIGIRDLVEFTLRSGDLNAKLNSNNTAKQGAKIHRKLQNSKYKAFE
TEYYLDNTLKINDIDFKIEGRADGVLVKDNTAEIIEIKTSDVQYEQLSESMTTLYWAQAK
VYAHFLMLKEPILKSVKLTLCYVQTPDEDITTESITISKDDAKTFFNELISEYEEWLKLR
TDIIKQRNQTANQMPFPFEQFRDGQRQFSAVVYKTIVNHKHLFAQAPTGTGKTISTLFPS
IKSMGKNIANRIFYLTAKQSTRVVASEAVDLMMDKGLFIKTITLTAKDTITFDTERNLKP
EDNPYMIGYYDRLKPAIKDILTNHNQITRAVIEEYAEKYKIDPFEFSLDVSQFCDIIICD
YNYLFDPQVHLQRFFTVEDPDNIFLIDEAHNLVNRSRDMYSAAVSNEKLDQLIEETDDNE
DIERLHKAFKNFKQSFTINAKILTDSDEEYIHLDNPLSAFGKQVNKLCNVINDWLGRDDR
DEALSDLVVDFYFSLLSYQRIAELYDDTFKTRLFYDRNHNVIIKLFCMDPSPFIGESLQL
GGSAILFSATLSPMDYYQRVLGDEEDSITYEIQSPFNPVNQQIIVTNYIETTYAKRPASI
QPIINTIDAMIESKPGHYLIFLPSNRYLSDVVEAFQKQHPLVETAIQTADITPEERQDYI
DKFKENSDTTLVGFALLGGIFCEGIDLKYNHLIGVGIVSVGLPGLNPENDLIRYFFDAEN
GHGFDFAYQLPGLNNVFQAAGRLIRTNQDIGNVILMDQRFSQNRYQKLFPANWHAGNLIK
SFNQNQTKQALDNFWKMHK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
ttgattacaaattcaatcacgtcaggaggtgatcgtatcaatcatatcggcattcgcgac
ttagtcgaattcacattaagaagtggtgatttaaacgctaagttaaacagtaataatacc
gccaaacaaggtgctaaaatccatcgcaagttacaaaacagtaagtacaaagcttttgaa
actgaatactatctagacaacactttaaagattaatgatattgattttaaaatcgaaggc
cgtgctgacggtgtattagtcaaagataacaccgctgaaatcatcgaaattaagacatcg
gatgttcaatacgagcaactttccgaaagtatgacaacgctttattgggcacaggctaaa
gtctatgcgcactttttgatgttaaaagaacctattttaaagagtgttaaattaactctg
tgctacgtccaaactcctgatgaagacattacgactgaatcgattacgattagtaaagac
gatgctaaaacctttttcaatgagttaattagtgaatacgaagaatggctgaaattaaga
accgacattattaagcaacgtaatcaaactgctaatcaaatgcccttcccatttgaacaa
tttagagatggccaacgtcaatttagcgccgtcgtatataaaacaattgttaatcataaa
catctatttgcccaagctcctactggaaccggaaagacgatttcgactctctttccgtca
attaaatcaatgggtaaaaatatcgctaaccgcatcttttatttaacagctaagcaaagc
actcgtgttgtcgctagtgaagcagtggatttaatgatggacaagggattattcattaaa
acgattaccttaaccgcaaaagatacaatcacatttgatacggaaagaaacttaaaacct
gaagataatccatatatgattggctattacgatcgactcaaaccagccatcaaggatatc
ttaaccaatcacaatcaaatcactcgtgcagtgatcgaagaatacgctgaaaaatataaa
attgacccatttgaattttcattagacgttagtcaattttgcgatattatcatctgtgat
tataattatctctttgatccacaagtccatctacaacgtttctttaccgtcgaagatcca
gataatattttcttgattgatgaagcccacaacttagttaatcgttctcgtgatatgtat
tcagctgctgtttcaaatgaaaagttagatcaattaattgaggaaactgatgataatgaa
gacattgaacgcttacataaagcctttaaaaacttcaaacaatcatttaccattaacgcc
aaaattctcactgatagcgacgaagaatacattcatttagataatccattaagtgctttt
ggaaaacaggttaataaactgtgtaacgtcatcaatgactggttaggtcgagatgatcgt
gatgaggccctaagtgatttggtagttgatttttacttctcgctattaagttaccaaaga
attgccgaactttacgatgatacgtttaagaccagattattttatgaccgtaatcacaat
gtcatcatcaaattattttgtatggatccaagtccatttattggtgaatcactgcaatta
ggcggtagtgcaatattattctcagccacactatcaccaatggattattaccaacgtgtc
ttaggagatgaagaagatagcatcacctatgaaattcaatcaccatttaatcccgttaat
caacaaataatcgtgactaattacattgaaacaacttatgctaaacgccctgctagtatt
cagccaatcattaatacgattgatgcaatgattgaaagtaaacccggtcattatttaatc
ttcttaccttctaatcgttacctatcagacgtagttgaagcatttcaaaaacaacatcca
ttagtagaaactgcgattcaaactgctgatataactcctgaagagcgccaagattatatt
gataaattcaaagaaaattccgatacaactttagttggttttgcacttctcggtggtatt
ttctgtgaaggaatcgatttaaaatacaatcatttaatcggtgtcggcatcgtttcagtc
ggccttcctggtttaaatccggaaaacgatttaattcgttactttttcgatgcggaaaat
ggtcatggatttgattttgcatatcaattgcctggtctgaacaacgtctttcaagcagca
ggaagattaattcgtactaatcaagatatcggaaacgttatcttaatggatcaacgtttt
agccaaaatagatatcaaaaattattccctgctaattggcatgcgggcaatctaattaaa
tcatttaatcaaaaccaaactaaacaagcattagacaatttctggaaaatgcacaaataa
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