Apirhabdus apintestini: QNH14_09540
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Entry
QNH14_09540 CDS
T09955
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
aapt
Apirhabdus apintestini
Brite
KEGG Orthology (KO) [BR:
aapt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aapt03016
]
QNH14_09540
Enzymes [BR:
aapt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QNH14_09540
Transfer RNA biogenesis [BR:
aapt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QNH14_09540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Slx4
Motif
Other DBs
NCBI-ProteinID:
WPM85831
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All DBs
Position
1872788..1874713
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AA seq
641 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVEANKSYFIPPPQMKKVMHGDRI
IASIHTDKDREIAEPEELVTPFLTRFVGRVQKDDRYAILPDHPLLKDAIACRPDRGLAHE
FQDGDWAVAEMRRHPLKGDRSFYAELTHYITHGDDCFAPWWVTLARHNLEREAPNGVSVE
MMDEGLPREDLTALPFVTIDSASTEDMDDALVVEQKGDALILTVAIADPTAWIAAGSKLD
GIARVRAFTNYLPGFNIPMLPRELSDDLCSLRPNVRRPVLACRMRIEKDGTLNEDIHFFA
AEIESKAKLVYDNVSDWLEKQGDWQPDNDTIAEQITLLNEVCQRRSAWRQTHALVFKDRP
DYRFVLGEKGEVLDIIAEPRRIANRIVEEAMIAANVCAAITLRDKLGFGIYNLHAGFDPT
NIEQLTAMLESHGLHADPAEVQTLSGFCKLRREIDAQPSGFLDSRIRRFQSYAEIGTSPG
PHFGLGLEAYATWTSPIRKYGDMVNHRLLKALIKGEQPPRPEDETIAQMSERRRFNRMAE
RDVGDWLYARFLQDKAGTDTRYAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDELV
CSQETGTVQIKGESVYKVTEVIDITIAEVRMETRSIIARPA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggataatccgctgcttgcgcagcttaaacagcaattacactcccaaacgccg
cgcgctgaaggggtagtcaaaggcacggaaaaaggctttggtttcctcgaagtcgaagca
aataaaagctactttattccgcctccgcaaatgaaaaaggtcatgcacggtgaccgcatt
attgcctctatccacaccgataaagatcgtgaaattgcagagcctgaggagctggtcact
ccttttctgacccgctttgtcgggcgggtgcaaaaagatgaccgctacgctattttacct
gaccaccctttattaaaagacgcaattgcctgccgcccggatcggggcctggcacatgaa
tttcaggacggcgactgggccgtagcagaaatgcgccgccatccgctgaagggcgatcgc
agtttttatgctgaattaacgcattatattacccacggcgatgattgctttgctccctgg
tgggtgacgcttgcgcgccataaccttgagcgtgaagccccgaacggcgtgtcagtcgaa
atgatggatgaaggtctgccgcgtgaagatttaaccgccctgccctttgtaactattgat
agcgccagtactgaagatatggatgatgcgctggtggttgaacaaaaaggcgacgcgctg
attttgaccgttgccatcgccgatcccaccgcgtggatcgccgccggcagtaaattagac
ggtatcgcccgggttcgcgcattcaccaactatctgccggggttcaatatcccaatgctg
ccgcgcgaattatcggacgacctctgttctctgcgcccgaatgtgcgccgcccggtgctg
gcctgccgtatgcgcattgaaaaagacgggacgctgaatgaggatatccacttttttgct
gcggaaatcgaatctaaagcaaaactggtctacgataacgtgtccgattggctggagaag
caaggcgactggcagccggataacgacacaattgctgaacaaattacgctgctgaatgaa
gtctgtcagcgtcgcagcgcgtggcgtcagacgcatgcgctggtatttaaagaccgtcca
gactatcgcttcgtgttgggtgaaaaaggcgaagtattggatattattgccgaaccgcgc
cgtatcgcgaaccgcatagttgaagaagcaatgattgcagccaatgtttgcgccgcaatc
acgctgcgcgacaaactcggatttggcatttataacctacacgcaggtttcgatcctact
aacattgagcagctaactgcaatgctggaaagccacggtctgcatgccgatcccgcggag
gtccagaccttatccggtttttgcaaactgcgccgtgaaatagatgctcagccaagcggt
tttcttgatagtcgcatccgccgcttccagtcctacgcggaaattggcacctcaccgggt
cctcattttggattaggtttagaagcctatgcaacctggacgtcgccgatacgtaaatac
ggcgatatggttaatcatcgcttactgaaagcgttaattaagggtgaacaaccaccgcgt
cccgaagatgaaactatcgcgcaaatgagcgagcgtcggcgttttaatcggatggctgaa
cgcgacgttggagactggctatacgcgcgcttcttgcaggataaagcaggaaccgatacg
cgctatgctgcggaaattatcgatatcagccgtggtgggatgcgcgttcgcctcgtagat
aatggcgcagtggcgtttattcctgcccccttcctgcatgcggttcgcgatgagctggtt
tgcagtcaggaaacgggtaccgtgcaaattaagggcgaaagcgtttacaaagttactgag
gttattgacataactatcgctgaagtgcgcatggaaacgcgtagcataatcgcccgcccg
gcctaa
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