Apirhabdus apintestini: QNH14_18760
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Entry
QNH14_18760 CDS
T09955
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aapt
Apirhabdus apintestini
Pathway
aapt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aapt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QNH14_18760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aapt03019
]
QNH14_18760
03009 Ribosome biogenesis [BR:
aapt03009
]
QNH14_18760
Enzymes [BR:
aapt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QNH14_18760
Messenger RNA biogenesis [BR:
aapt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QNH14_18760
Ribosome biogenesis [BR:
aapt03009
]
Prokaryotic type
rRNA helicases
QNH14_18760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WPM84600
LinkDB
All DBs
Position
3649024..3650841
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AA seq
605 aa
AA seq
DB search
MADIETTFADLGLKTSILTALNDLGYEKPSPIQAACIPHLLEGRDVLGMAQTGSGKTAAF
SLPLLNNIDPDLRAPQLLVLAPTRELAVQVAEACNDFSKHMRGVQVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPEG
HQTALFSATMPEAIRRITRRFMKDPQEVRIQTSINTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVEPPNAELLSQRRLAKFAGRVQQQLESSDLEQYRALLAKIQPEGESEMEM
LAAALLKMAQGERTLILPPDPVVERRPRREFRERDESQNRSERPRRERRSAGEMELYRIE
VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDVLQHFTRTRILN
KPMNMQLLGDAQPRGERRSGGGRNFSNNERRGGGEGRRFSGERREGGRGPRRDDNSTGRR
RFGDA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggctgatatcgaaaccactttcgccgatctgggtctgaaaacctccatccttaccgct
ctgaatgatttgggctatgaaaagccctctccgattcaggccgcctgtattccacattta
ctggaagggcgagatgtactgggtatggcacagaccggtagtggcaaaacggcggcgttc
tctttgccgctgctgaataatatcgacccggatctgcgcgcaccgcagcttctggtgctg
gcgccgacgcgtgaactagccgttcaggtcgctgaggcgtgcaacgatttctctaaacat
atgcgcggtgtacaggtggtggcgctttatggcggccagcgttatgacgtacagctacgc
gcgctgcgtcagggtccacaaatcgttgtgggaacaccgggtcgtctgcttgatcatctg
aaacgcggaacgctggatctctctaatctgagcggtctggtattggatgaagccgatgaa
atgctgcgcatgggcttcattgaagatgttgaaaacatcatggcgcaaatccctgagggg
catcaaactgcgctattttccgcaacgatgccggaagctatccgccgtatcactcgtcgc
tttatgaaggatccgcaagaagtgcgcatccagacgagtatcaatacgcgccctgatatc
agccagagttactggactgtctggggaatgcgtaaaaatgaagcgctggtgcgtttcctc
gaagcagaagattttgatgcggcaattatttttgtgcgcactaaaaacgcgacgctggaa
gtggcggaagcgctggaacgtaatggttacaacagcgccgcattaaacggcgatatgaac
caggcgctgcgtgagcagacgctggaacgcttaaaaaatgggcgtctggatattctgatt
gctaccgatgttgctgcacgcggcctggatgttgatcgcatcagcctggtcgttaactac
gatatcccgatggatgccgaatcctacgttcaccgtattgggcgtaccggccgtgcgggg
cgcgccgggcgtgcacttctgttcgtcgagaaccgtgagcgccggctgctgcgcaatatc
gagcgtacaatgaagctaaccatccctgaggtcgagccgccaaacgcagaactgctgagt
cagcgccgtctggcaaaatttgccggtcgcgtccagcagcagcttgaaagcagcgatctg
gagcaatatcgcgctctgctggcgaagatccagccagaaggcgagtctgaaatggagatg
ctggctgccgcgctgctgaaaatggcgcagggcgaacgcactcttattctgccgccggat
ccggtagttgagcgtcgtccgcgccgtgagttccgcgagcgtgatgagagccagaatcgc
agcgagcgcccgcgtcgtgagcgtcgcagcgctggtgaaatggaattgtaccgtattgaa
gtaggtcgcgatgatggcgtggaagttcgccacatcgttggcgccatcgccaacgaaggg
gatatcagcagccgttacattggtaatatcaagctgtttgcttcccattcgacaatcgag
ctaccgaaaggtatgccaggcgatgtgttacagcatttcactcgtacgcgtattctgaat
aaaccgatgaatatgcaactattgggtgatgcacagccgcgtggcgaacgtcgcagcggt
gggggacgtaacttcagtaataacgagcgtcgcggcggcggtgaaggtcgtcgtttttcc
ggtgagcgccgcgaaggcggccgtggtccgcgtcgggacgataacagcaccggccgtcga
cgttttggcgatgcctaa
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