Arthrobacter alpinus R3.8: AOC05_03935
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Entry
AOC05_03935 CDS
T04095
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aaq
Arthrobacter alpinus R3.8
Pathway
aaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC05_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaq03019
]
AOC05_03935
Messenger RNA biogenesis [BR:
aaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOC05_03935
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
BRK
Cas8b_C
Motif
Other DBs
NCBI-ProteinID:
ALE91682
UniProt:
A0A0M5LX31
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Position
915228..916919
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AA seq
563 aa
AA seq
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MTQTTEPGLRTPPPLPPGTLRIVPLGGIGEIGRNMTVFEVAGKLLIVDCGVLFPEEDQPG
VDVILPDFSYIEDRLEDVVGVVLTHGHEDHIGAVPYLLRLRGDLPLIGSQLTLAFIEAKL
MEHRIKPSTLTVKEGHVEQLGPFQCEFIAVNHSIPDALAVFIRTAGGTVLHTGDFKMDQL
PLDGRTTDLRHFARLGEEGVDLFLVDSTNADVPGFTTSEAEIGPTLEALFGKAAKRIIVA
SFSSHVHRVQQVLNAAVMHNRKVAFVGRSMVRNMAIAAKLGYLSVPAGVLVDMKNVDNLP
DNKVVLMSTGSQGEPMAALSRMASGDHKIAVGKGDTVILASSLIPGNENAVYRIINGLLR
LGADVIHKGTAKVHVSGHAAAGELLYCYNILTPKNVMPVHGETRHLIANAKIAQSSGVPV
ENILLTEDGSVIDLVDGTARVVGQVECGFVYVDGHSVGEITDEDLKDRRTLGDEGFISII
TVVNRSTGKIVTGPDIHARGVAEDDSVFDEIKPKIAAALEEAVMANTEHTTHQLQQVVRR
VIGSWVSRKLRRRPMIIPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccagaccaccgagcccggactgcgcaccccgccacccctgccgccgggcaccctg
cgcatcgttccgctgggcggcattggcgaaatcggccggaacatgacggtctttgaagtg
gccggcaaactattgatcgtcgactgcggagtgctcttcccggaggaggaccagccgggc
gtcgacgtgatcttgcccgacttctcctacatcgaggaccggcttgaggacgtggtgggc
gtggtgctcacccacggccatgaggaccacatcggtgccgtgccgtaccttttgcggctg
cgcggtgatctcccgctgatcggttcccagctgacgcttgccttcatcgaggccaagctg
atggagcaccgtattaagccatcgaccctgaccgtcaaagaagggcacgttgagcagctg
ggcccgttccagtgcgagttcatcgccgtcaaccactccataccggacgccttggccgtc
ttcatccggaccgctggcggcaccgttctacacaccggcgacttcaagatggaccagctg
cccttggatggccgcaccaccgacctgcgccactttgccaggctgggcgaggaaggcgtg
gacctgttcctggtcgattccaccaacgcggacgtccccggcttcaccaccagtgaggca
gaaattggaccaaccctggaggcattgttcggcaaggccgccaagcgcatcatcgtggcc
agcttctcctcccacgtgcaccgcgtccagcaagtcctcaacgccgccgtcatgcacaac
cgcaaggtcgcgttcgtgggccgctccatggtgcgcaacatggccattgcagcgaaattg
ggttacctgtccgttccggccggggtgctggtcgacatgaaaaacgtggacaatctacct
gacaacaaagtggtcctaatgtccaccgggtcacagggtgagcccatggctgccttgtcc
cgcatggccagcggtgaccacaagatcgccgtcggcaagggcgacaccgtcatcctcgcc
tcctcgctgatccccggcaatgagaacgccgtttaccggatcatcaacggcctgctcaga
cttggcgccgacgtcatccacaaaggtacagccaaggtgcacgtctccgggcacgccgcc
gctggcgaactgttgtactgctacaacattctcacccccaagaacgtcatgccggtccac
ggcgagacccggcacctcattgccaatgccaagatcgcgcagtcttcaggggtgcccgtg
gagaacatcctgctcacagaggacggctccgtcatcgatctggtcgatggcacggcccgc
gttgtgggccaggtcgaatgcggtttcgtctacgtggacggccacagcgtcggggagatc
accgatgaagacctcaaggaccggcgcacgcttggtgatgagggcttcatctccatcatc
accgtggtgaaccgctccacgggtaaaattgtcacgggcccggacatccacgcacgcggc
gtggcggaggacgattccgtctttgacgagatcaagccgaagatcgccgccgccctggaa
gaagccgtcatggccaacaccgaacacaccacccaccagctccagcaggtggtgcgccgg
gtgatcggcagctgggtcagccgcaagctccgccgccggcccatgatcatcccggtggtc
ctggaagcgtag
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