Arthrobacter alpinus R3.8: AOC05_10290
Help
Entry
AOC05_10290 CDS
T04095
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aaq
Arthrobacter alpinus R3.8
Brite
KEGG Orthology (KO) [BR:
aaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaq03019
]
AOC05_10290
Enzymes [BR:
aaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOC05_10290
Messenger RNA biogenesis [BR:
aaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOC05_10290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
PhoH
AAA_23
ABC_tran
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALE92605
UniProt:
A0A0M3UG76
LinkDB
All DBs
Position
2292425..2296360
Genome browser
AA seq
1311 aa
AA seq
DB search
MTFTITYPPALPVSERREDIMAAIAANQVTIIAGETGSGKTTQIPKMCVELGLAEKGLIG
HTQPRRLAARTVAERIASELDVEIGEEVGFQVRFTGQVGPKTKIKLMTDGILLAEIQRDR
LLRKYSAIIIDEAHERSLNIDFILGYLRQILPQRPDLKIIITSATIDPERFAAHFASPDG
PAPIIEVSGRTFPVDIRYRPLSGPATGEDDDELGSGADRRQFVGDREDGGNSEEDRDPLD
AVCDAVDELSKEAPGDILIFFSGEREIRDAADALAGRVKTNPRLRDVQILPLFARLSLAE
QHAVFTTGSRKRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQA
SANQRSGRCGRVSDGICIRLYSEEDYNARSEFTDPEILRTNLAAVILQMTAMGVAKGPKD
VEKFPFVQPPDSRAITDGVTLLRELGAVTAQGGITDVGRQLSQLPVDPRLGRMIVEAAKR
GVAAEVMVLAAALTIQDPRERPTDKQQLAAEKHKRFQDENSDFTGFLNLWRYIKDKQREL
SSSAFRRLCKAEFINYLRVREWQDLFTQLKQMAKPLDIKVAGSNIDPVGNHDAIHKSLLT
GLLSHIGLYDARKREYAGARGTRFMVFPGSALFKKSPDWVMAAELVETSRLWARVAAKFD
PLWAEEVAPGLVKRTYSEPHWSKKMGSVMAHEKVTLYGVPIVPDRRIQYSRIDPELCREM
FIQHALVEGDWHTNHKFFHRNQAVLAEVEELETRMRRRDLRVDDEALFEFYDGRVGAEVV
SERHFDKWWKEARHENPALLDFDTHVVMAEEPALDETAFPKIWTEGEFVLPLSYEFHPTA
PGAAPNPSDGVSVQVPLLFLNQLHQAPFRWQIPGLRAELVTALIKSLPKAVRKNFIPAPD
VGRQAAAALASDFDPSVDVLEPSLELALRRIKGHVIPPGSWNWDAVPTHLRMTFSVVDKN
GKILEEGQDLSALQAELAGATRRAIAESLGATPKTVSLPSRSPQTQAPGGSLAAVGPSAG
TAGIQERSGITEWDIASLPREVKRLVAGHTVTGYPALVDEGATAGIRIFQRQDVQESAMR
GGVIRLLALKVPSPDRYVLDHLSNTEKLTFSQNPHGSVTDLIADCTLATIDKLTPAQLPW
TEKDFQALYEVVRAELIDTVFSVTAVVERVLASKLRIDKALRASNSLPLISALNDIKAQL
ELLVYPGFVAKTGFAQLSQLPRYLSAIEKRLEKLPSNVPRDAASMAAVQRLEDEYDDAVA
ALVPGQRSTAALEHVRWMLEELRVSLFAVELGTAHSVSEKRIRVAMTKAMA
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgactttcactatcacctaccctcccgcgctgccggtctccgagcgtcgcgaggacatc
atggccgcgatcgccgccaaccaggtcaccattatcgccggcgagaccggttcgggaaag
accacccagatccccaagatgtgcgtggagctgggcctggccgagaagggcctgatcggc
cacacgcagccgcgccgcctggccgcccgcaccgtcgccgagcgtatcgccagcgagctc
gacgtcgagatcggcgaggaggtgggcttccaggtccgcttcaccggccaggtgggtccg
aaaaccaagatcaagctcatgaccgacggcatcctgctagcggaaatccagcgcgatagg
ctactgcgcaaatactccgccatcatcatcgacgaggcccacgaacgctccctgaacatc
gacttcatcctcggctacctgcgccaaatcctgccccagcgcccggatctgaagatcatc
atcacctcggccacgatcgaccccgaacgcttcgccgcccacttcgcctcccccgacggc
ccagcccccatcatcgaagtctccgggcgcaccttccccgtggacatccgctaccgtccc
ttgagcggtcctgccacaggggaggacgacgacgaactgggctcgggcgcggaccgtcgc
cagttcgtaggagacagggaagacgggggtaacagtgaggaggaccgggacccgttggat
gcggtgtgcgacgccgtggacgaactctccaaggaagcccccggggacatcttgatcttc
ttctccggtgaacgtgaaatccgggatgccgcagatgctctggccggccgggtgaaaacc
aacccgcggctgcgcgacgtccagatcctgccgctattcgcccgtctgtcgctggccgaa
caacacgcagtgttcaccacgggcagccgcaagcgaatcgtgctggcgaccaacgtggcc
gaaacctcgctgacggtgccgggcatcaagtacgtgatcgacaccggcaccgcccgcatc
tcccgctactcacaccggaccaaggtccagcgactgcccatcgagcgggtctcccaggca
tcggcgaaccagcgctcgggccgttgcgggcgcgtctccgacggtatttgcatccggctg
tactccgaggaggactacaacgcccgcagcgagttcaccgacccggaaatcctgcgcacc
aacctggccgccgtcatcctccaaatgacagccatgggcgttgcaaagggacccaaggac
gtggaaaagttcccgttcgttcagccgccggactcccgcgccatcaccgacggcgtaacc
ttgctgcgcgagctgggcgccgtgaccgcccaaggcgggatcaccgacgtcggacgccag
ctctcccaactaccggtggacccgcgactgggccggatgatcgtggaagcagccaagcgc
ggcgtggccgccgaggttatggtgctcgccgccgccctcacgattcaggacccgcgcgaa
aggcccacggacaaacagcagctcgccgccgaaaagcacaaacgcttccaggacgaaaac
tccgacttcaccgggttcctgaatttgtggcggtatatcaaggacaagcagagggagctg
tcctccagtgcatttaggcgcctgtgcaaggccgaattcatcaattacctgcgcgtgcgc
gaatggcaggatttgttcacccagctcaagcagatggcgaagccgctagacatcaaggtc
gcaggctccaacatcgacccggtgggcaaccacgacgccatccacaagtccctgctgacc
ggcctgctcagccatattggcctctacgatgcgcgaaagcgtgagtacgccggcgcgcgc
ggcaccaggttcatggtgtttccaggctcggccctgttcaaaaagtcgccggactgggtg
atggccgccgaactggtggaaacgtcccggctgtgggccagggtggcggcgaagttcgac
ccgctgtgggccgaggaggtggcccccggactggtcaaacgtacctacagcgagccgcac
tggtccaagaaaatgggctcggtcatggcgcacgaaaaagtcacgctctacggggttccg
atcgtgcccgacaggcgcatccagtacagccggatcgacccggagctgtgccgtgagatg
ttcatccagcacgccctggtggagggcgactggcacacgaaccacaagtttttccaccgc
aaccaggccgtactggccgaggtggaggagctggaaacccgcatgcgccgccgcgacctg
cgtgtggacgacgaggcgctctttgagttctacgacgggcgcgtgggcgccgaggtggtc
tccgaacggcacttcgacaagtggtggaaggaggcccggcacgaaaacccagcgctactg
gactttgacacgcacgtggtcatggccgaggagcccgcgctcgacgaaaccgccttcccc
aaaatctggacggagggcgagtttgtgctgcccctgtcctacgaattccatcccacggcg
ccgggcgctgccccgaacccgtccgacggcgtgagtgtgcaggtgccgctgttgttcctg
aaccaacttcaccaggccccgttccgttggcagattccgggcttgcgcgccgaactggtc
acggcgttgatcaagtcgctgcccaaggcggttcggaagaacttcatcccggcccctgat
gtgggccggcaggcggccgccgcgctggcgtccgatttcgatccgtcagttgacgtgctg
gaaccttccctggaactggcgctgcgccggatcaagggccatgtcatcccacccggatcc
tggaactgggatgccgtgcccacacacctgcgcatgacattctccgtggtggataaaaac
ggcaagatcctggaggagggccaggacctttccgcactgcaggccgagctcgccggtgcc
acccgccgggccatcgccgagtcgctgggcgctacgccgaagacggtctcgctccccagc
cgctccccccaaacgcaagctcccggcgggtccctcgcggccgtgggcccaagcgcgggc
accgccggcattcaggagcgttccggcatcaccgaatgggacatcgcttccctgccccgg
gaggtcaaacgattggtggccgggcacaccgtgaccggttacccggctctcgtcgacgaa
ggcgccactgcgggcatccgtatcttccagcgccaggacgttcaagaatccgccatgcgc
ggcggcgtgatccgcctgctggcgctgaaggtcccctctcccgacaggtacgtcctggac
cacctgagcaacaccgaaaagctcacattcagccagaacccgcacggttccgtcacggac
ctgatcgccgattgcaccctcgccacgatcgacaagctcactcctgcgcagctgccatgg
acggagaaggacttccaggcgctgtatgaagtcgtcagggcggaacttattgacacggtg
ttctcggtgaccgccgtcgtcgaacgcgtcctagcctcgaaactgcgcatcgacaaggcg
ctgcgggccagcaacagcttgccgctcatcagcgcgctgaacgacatcaaggcgcagctg
gaattgctggtctatccgggctttgtggccaagaccggctttgcccagctcagccagctg
ccacgttatttgtcggcgattgagaagcggctggagaagctgccctccaatgtgcctcgc
gacgcggcctcgatggcggccgtgcagcgcctggaagatgagtacgacgacgccgtggcg
gccttggtgcccgggcagcgctctactgcggcgctggagcacgtgcgttggatgctggag
gaactacgcgtgagcttgtttgccgtggagctggggacggcgcattcggtgtcggagaag
cggattagggtggcgatgaccaaggccatggcctaa
DBGET
integrated database retrieval system
