Arthrobacter alpinus R3.8: AOC05_12860
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Entry
AOC05_12860 CDS
T04095
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aaq
Arthrobacter alpinus R3.8
Pathway
aaq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOC05_12860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaq03021
]
AOC05_12860
03400 DNA repair and recombination proteins [BR:
aaq03400
]
AOC05_12860
Enzymes [BR:
aaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOC05_12860
Transcription machinery [BR:
aaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOC05_12860
DNA repair and recombination proteins [BR:
aaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOC05_12860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
Motif
Other DBs
NCBI-ProteinID:
ALE92986
UniProt:
A0A0M4QXR2
LinkDB
All DBs
Position
complement(2851483..2855385)
Genome browser
AA seq
1300 aa
AA seq
DB search
MSSESSFGLMQIGLATAQDIRDWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDDDARHAELPNLQTEHDLEKKRMVDMRDSDIATIARDLEGE
LQRLEGEGAKAAEKKKARDSADRQMANVRKRADADIDRLEQVWDRFKGLKVADLEGDEAL
YRELRDRYGMFFEGSMGAEAIKKRLETFDMAGEAEILRDIIQNGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKREGSVGEGR
TFSTPAEAIMAHDAGELHLNSQVKIRLSDFVPNADWVAPEGWVPGTPAIVATSLGQVLFN
ETLPADYPWVEKVADKGQLSEIVNDLAERYPKVVVAATLDNLKDAGFYWATRSGITVAIS
DIKVPASKPAILEGYEVKAAKVQAQFDKGLIADEERRQDLIDIWNQATNEIADAMRESFA
ESNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREDDCGTERGLTLPIAVVDSMGELQLHE
EVENSVYARTLASEVVDAAGKVLASAGADVGDVLIAELFAAGVAEIKVRSVLTCESTVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASRGEDITQGLP
RIQELFEARTPKGVAPIAEAAGRINIDESERTMRLILTPDDGTEEIAYPVLRRARLQVVD
GEHVEVGQKLVVGAVDPKQVLRILGPRAAQKHLVEEVQRVYRSQGVGIHDKHVEVIVRQM
LRRVTVIESGDSKLLPGELAERGRFETENRRVVSEGKKPASGRNELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTNVTVEPTEEAKAN
LFTGPSAFSDFDYVGGAGDLGAEFRAIPLDDYDLGTNFSG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagattggcctggccaccgcgcaagatatc
cgcgactggagccacggcgaagtcaagaagccggaaaccatcaattaccgcacgctcaag
cctgaaaaggacggcctcttctgcgagaagatcttcggcccgtcccgcgactgggaatgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgttgtggcgtt
gaagtcacccgcgccaaggtgcgtcgtgagcggatgggccacattgagctcgccgctccc
gtaacccacatctggtacttcaagggcgtcccctcgcggttgggctacctgctggatctg
gcaccgaaggaccttgaaaaggtcatctactttgctgcctacatgatcaccagcgttgat
gacgatgcacgtcacgccgagttgccgaacctccagaccgagcacgacctggagaagaag
cgcatggttgacatgcgtgactccgacatcgccacgatcgcccgcgatcttgaaggcgaa
ttgcagcgccttgaaggtgaaggcgccaaggcggccgagaaaaaaaaggcccgcgactct
gcggaccgtcagatggccaatgtgcgcaagcgcgccgacgccgacatcgaccgcctcgag
caggtttgggaccgtttcaagggcctgaaggttgccgaccttgaaggcgacgaggcccta
taccgcgaattgcgtgaccgttacggcatgttcttcgaaggttccatgggtgccgaagcc
atcaagaagcgtcttgagaccttcgacatggccggcgaagccgagatcctgcgcgacatc
atccagaacggcaagggccagcgcaagacgcgtgccctgaagcggttgaaggttgtcaac
gcgttcctgaccaccaacaacagcccgctgggcatggtcctggacgccgtcccggtcatc
ccgccggaactgcgccccatggttcagcttgacggtggccgtttcgccacctcggacttg
aacgatctctaccgtcgcgtgatcaaccgcaacaaccgtctcaagcgtctgcttgacctg
ggtgctccggagatcatcgtcaacaatgagaagcgcatgctgcaggaagctgttgactcc
ctctttgacaacggtcgtcgcggacgtccggtcaccggaccgggcaaccgtccgttgaag
tcgctctctgacatgctcaagggcaagcagggtcgattccgccagaacctccttggcaag
cgcgttgactactctggccgttcggtcattgttgttggcccgcagttgaagctgcaccag
tgtggtctgcccaagcagatggccctggagctcttcaagccgttcgtgatgaagcgcttg
gttgaccttaaccatgcacagaacatcaagagcgccaagcggatggtggagcgtttccgt
ccccaggtctgggatgttctcgaagagatcatcaccgagcatcctgtgctgctgaaccgt
gcaccaaccctgcaccgtttgggtatccaggcgttcgagccgcagctagttgaaggcaag
gcaatccagctgcacccgctggtttgtggtgctttcaacgctgacttcgacggcgaccag
atggcagttcacctgccgctgagccccgaagctcaggctgaagcacgcatcctgatgctc
tcgagcaacaacatcttgaagccttcagatggccgcccggtgaccttgccgtcacaggat
atgatcatcggcctgtaccacttgaccaccaagcgtgaggggtcggtcggcgaaggccgc
accttctccaccccggctgaagccatcatggcgcacgacgccggcgagttgcacttgaac
tcgcaggtcaagatccgtctgagcgactttgtgccgaacgccgactgggttgctcccgag
ggttgggtgcctggcacaccggccatcgtagcaacgtcgcttggacaggttctgttcaac
gaaaccctgcccgcggactacccgtgggttgagaaggtggccgacaagggccagctctcc
gagatcgttaacgatctcgccgagcgttaccccaaggtcgttgtggctgcaacgttggat
aacctgaaggatgccggtttctactgggcaacccgttcaggtatcaccgttgccatctcc
gacatcaaggttccggcttccaagccggccatccttgaaggttacgaggtcaaggcggcc
aaagttcaggcgcagttcgacaagggcctcatcgctgatgaggaacgccgtcaggacctg
atcgacatttggaaccaggctacgaacgagatcgcagatgcgatgcgtgagtccttcgcc
gagtccaacacgatcaaccgcatggtttcctccggtgcccgtggtaactggatgcaggtt
cgccagattgccggtatccgtggcttggtggctaaccctaagggtgaaattattcctcgc
ccgatcaagtcctcctaccgtgagggcctgtcggttttggagtacttcatcgccactcac
ggtgcccgtaagggtctggctgatacggctctgcgtacggccaactccggctacctgacg
cgtcgtctggtcgacgtttcgcaggatgtcattgttcgtgaagacgactgtggcaccgag
cgcggcttgaccctgccgatcgccgtggttgactccatgggtgaactgcagttgcacgag
gaggttgagaacagcgtttacgctcgcaccttggcttctgaggttgtggacgccgctggc
aaggtgctggcttccgccggcgccgatgttggtgacgtactcatcgccgagctgttcgca
gccggtgtcgctgagatcaaggtccgctccgtgttgacttgtgaatcgactgtcggaacc
tgtgcactgtgctatggccgttccttggcaacagggaagaccgtggacatcggtgaggct
gtcggtatcatcgcagcacagtccattggtgagcccggcacgcagctgaccatgcgtact
ttccacaccggtggcgctgtttcggccagccgtggcgaggacatcacccagggtctgccc
cgtatccaggagctcttcgaagcacgtaccccgaagggtgtcgcaccgatcgctgaggcc
gccggacgcatcaacattgatgagtccgaacgcaccatgcgattgatcctgaccccggac
gacggcaccgaagagatcgcttacccggttctgcgccgtgcacgcctgcaagttgttgac
ggcgagcacgttgaggttggccagaagctggtggtgggtgctgttgaccccaagcaggtt
ctgcgtatcctgggcccgcgtgcagcacagaagcacctcgttgaggaagttcagcgcgtt
taccgcagccagggtgtagggatccacgacaagcacgttgaagtcatcgtgcgtcagatg
ctccgtcgcgtgacggtcatcgagtccggtgactctaagttgctgcccggtgagcttgcc
gagcgcggccgcttcgagacggaaaaccgtcgcgtcgtgtccgagggcaagaagccggcc
tccggccgtaacgagctcatgggtatcaccaaggcttccttggctaccgaatcttggctc
tccgctgcttccttccaggaaaccacccgcgttctgacgcaggcggccatggaaggcaag
tctgacccgctgctgggtctgaaggagaacgtcatcatcggtaagctgatcccggctggt
acgggtctgccgcgctacaccaatgtcacggtggagccgaccgaagaagccaaagccaac
ctgttcaccggtccgagcgcgttcagcgactttgactacgtgggcggcgccggcgatctg
ggtgccgagttccgtgccatccccttggatgactatgatctgggaaccaacttcagcggc
tag
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integrated database retrieval system
