Arthrobacter alpinus R3.8: AOC05_13125
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Entry
AOC05_13125 CDS
T04095
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aaq
Arthrobacter alpinus R3.8
Pathway
aaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC05_13125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaq03019
]
AOC05_13125
03009 Ribosome biogenesis [BR:
aaq03009
]
AOC05_13125
Enzymes [BR:
aaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOC05_13125
Messenger RNA biogenesis [BR:
aaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOC05_13125
Ribosome biogenesis [BR:
aaq03009
]
Prokaryotic type
rRNA helicases
AOC05_13125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALE93033
UniProt:
A0A0M4RQ01
LinkDB
All DBs
Position
complement(2906572..2908590)
Genome browser
AA seq
672 aa
AA seq
DB search
MRCSLPPGPMNEDILTMPENTTESTENASVSTEEVPELTFADLGIDGRVLSALSDVGYEK
PSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRMAELMDLNGPTKDTQILVLAP
TRELALQVAEAFTSYAKHMDNFSVLPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHLSK
GSLDLSNLQYLVLDEADEMLRMGFAEDVEQILSKTPKEKQVALFSATMPGAIRRISKQYL
NNPAEVTVKSKTTTGANTRQRYLQVMGPHKLDALTRVLEVEEFEGVIAFVRTKMATEDLA
DKLKSRGFQAAAINGDIPQQQRERTIEALRSGHIDILVATDVAARGLDVERITHVINYDI
PHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEKATRQPVDQMHLPSAETINSL
RLGKFAEKITETLASQDVAKFRDLIASYEQEHDVPASEIAAALAVMAQGGQPLLVNDLPA
APEYQKKERAKDGFGSRGPTRTLTEGNATYRIAVGRRQRVMPGSIVGAIANEGGLSSSQI
GGIDIRADHTLVELPAELSKDQWRALSKTRISGELINLELDKGRRPTTGGAAPYQGGGER
NDRGQGGFKKKFDGDRSGGYRGADRGADRGADRGAERGGFNSDRGQGHTGHGAGDRRPRH
EGGQSFNSKGKW
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgcggtgttcattgccgcctggccctatgaatgaggacatcttgaccatgcccgaaaat
actaccgaatccactgagaacgcttccgtgtccacggaagaagtaccggaacttactttt
gccgacctcggcattgacggccgcgtgctgtccgccctgagtgatgttggctacgagaag
ccctcacccatccaggccgccaccatcccgctgctgctcgaaggccgcgacgtcgttggc
ctcgcccagaccggtaccggcaagacggcagcattcgccgttcctgccctgtcccgcatg
gctgagttgatggacctcaacggccccaccaaggacacccagatccttgtcctggcaccg
acccgcgagcttgcgctgcaggttgccgaagctttcacctcctacgccaagcacatggac
aacttcagcgtcctgcctgtctacggtggctccgcttacggccctcagctggccggcctg
cgccgcggcgcacaggttgttgtcggcacccccggccgcgtcatcgaccacctgtctaag
gggtcgctggacctctccaacctgcagtacctggtgttggatgaagccgatgagatgctg
cgcatgggctttgccgaagacgttgagcagatcctgtccaagacgccgaaggaaaagcag
gttgccctgttctcggccacgatgcccggcgcgattcgccgcatctccaagcagtacctg
aacaacccggcagaagtgacggtcaagtccaagaccaccaccggcgccaacacccgccag
cgatacctgcaggtcatgggcccgcacaagctcgacgccctgacccgcgtgcttgaagtt
gaagagttcgaaggcgtcatcgcgttcgtgcggaccaagatggccacggaagacctggct
gacaagctgaagtcgcgtggattccaggctgccgccatcaacggcgacatcccgcagcag
cagcgcgagcgcaccattgaggcacttcgcagcggccacatcgacatactggtggccacc
gacgtcgccgcccgcggtctggatgttgagcggatcacccacgtgatcaactatgacatc
ccgcacgacaccgagtcctatgtgcaccgcatcggccgcacgggccgtgccggccgctcc
ggtgacgcaatcctgttcatgacaccgcgcgagaagtacctgctgcgcgccatcgagaag
gccacccgccagccggttgaccagatgcacctgccgtctgcagagaccatcaactcgctg
cgccttggcaagttcgctgagaagatcaccgagaccttggccagccaggacgttgccaag
ttccgcgacctgattgccagctacgagcaggagcacgacgttccggcgtcggaaatcgcc
gctgccttagcagtcatggcccagggcgggcagccgctgctggtcaacgacctgcctgca
gccccggaataccagaagaaggaacgcgccaaggacggcttcggctcacgcggcccgacc
cgcaccctgaccgaaggcaacgccacctaccgaattgctgtaggccgtcgccagcgtgtc
atgcctggctccatcgtgggcgccattgccaacgaaggcggcctgtcctcctcccagatc
ggcggcattgacatccgcgccgaccacaccttggtggaattgccggcagagctgagcaag
gaccagtggcgtgccctgagcaagacccgcatcagcggcgagctcatcaacctcgagctg
gacaagggccgccgccccaccaccggtggcgcggccccgtaccagggtggcggagagcgt
aacgaccgcggccagggcggtttcaagaagaagttcgacggcgaccgcagcggcggatat
cgcggtgcagaccgcggtgcggaccgcggtgcggaccgcggtgcagagcgcggcggcttc
aacagcgaccgcggccagggccacaccggccacggtgccggcgaccgccgtcctcgccac
gaaggcggacagagcttcaatagcaagggcaagtggtaa
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