Arthrobacter alpinus R3.8: AOC05_17125
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Entry
AOC05_17125 CDS
T04095
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aaq
Arthrobacter alpinus R3.8
Pathway
aaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC05_17125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaq03019
]
AOC05_17125
Messenger RNA biogenesis [BR:
aaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOC05_17125
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Fn3_Dep-1_1st
Motif
Other DBs
NCBI-ProteinID:
ALE93640
UniProt:
A0A0M4R0U5
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Position
3758382..3760055
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AA seq
557 aa
AA seq
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MRRTARQTPPALAEGAMRIVALGGLGEIGRNMTVFEFAGKLLIVDCGVLFPEEHHPGVDL
ILPDFSYLKDRWQDVVGLVLTHGHEDHIGGVPYLLKHRADIPVISAKLTLAFLKTKLEEH
RIKGKLIQVKEGDRRKYGPFDVEFLAVNHSIPDGLAVAIRTPAGLVLETGDFKMDQFPLD
KRITDLAGFARLGEEGVDLFMPDSTNAEVPGFLAAEADLIPAIDQVMRTAPRRVVVSSFA
SHVHRIQQIIDSAHKYNRKIAFVGRSMVRNMTTARELGYLKIPRGMLVDAKELAKMDATK
AVLICTGSQGEPMAALARMANGDHQINLTEGDTVLLASSMVPGNESSIYRLINDLTKQGA
NVIHKGNAKVHVSGHASAGELVYCYNLVRPKNVMPVHGEYRHLKANAALAVRTGVDPKNA
FIVDDGTALDLKDGVVKISGSVPAAYVYVENMVAGAATEESLQDRIRLAQDGAVTVLLIV
NPDTGKIEEDPEYFAVGFNLTDKDIEKATGIVEKTVAGLRGEKTGHGAEKAIADALLRWS
DRALRRKPVYTVIIVEA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaaccgcccgccagaccccgcccgcccttgccgaaggggcaatgcgcatcgtc
gccctcggaggtttgggggagatcggccgcaacatgaccgtcttcgaatttgcaggaaag
ctgttgatcgttgactgcggggtgctcttccctgaggagcaccatcccggcgtggacttg
atcctgcctgatttctcctacctgaaggaccgttggcaggacgttgtgggcctggtgctc
actcacgggcacgaggaccacatcggcggcgtgccgtacctgctcaagcaccgcgccgac
atccccgtcatttccgccaagctgaccctggccttcctcaagaccaaacttgaagaacac
cggatcaagggcaaactgatccaggtcaaggaaggggaccgtcgcaagtacggcccgttc
gacgtcgaattcctggccgtcaaccactccatccccgacggcctggccgttgccatccgt
acccctgccggcttggtgttggaaaccggcgacttcaagatggaccagttcccgctggac
aagcgcatcaccgacctggccggctttgcccggctgggcgaggaaggcgtggacctgttc
atgcccgactccaccaacgccgaggtccccggcttcctggccgccgaggccgacctgatc
ccggccatcgaccaggtcatgcgcacggccccgcgccgcgtggtggtttccagcttcgcc
agccacgtgcaccgcatccagcagatcatcgattccgcgcacaagtacaaccgcaagatc
gcgtttgtgggccgctccatggtccgcaacatgaccactgcccgcgaacttggctacttg
aagattccgcgcggcatgctggtcgacgccaaggaactggccaagatggacgccaccaag
gccgtcctgatctgcacaggttcgcagggcgagcccatggcagccctggcacggatggcc
aacggagaccaccagatcaacctgaccgagggcgacaccgtcctgctggccagctccatg
gtgcccggcaacgagtcctcgatttaccgtctcatcaacgacctgaccaagcagggcgcc
aatgtgattcacaagggcaacgcgaaggtccacgtctccgggcacgccagcgccggcgaa
ctggtctactgctacaatctggtgcgccccaagaacgtcatgccggtgcacggcgaatac
cgccacctgaaggcgaacgcggcactggccgtacgcaccggcgtcgacccgaagaacgcg
ttcatcgttgacgacggcacggcgctggacctcaaggacggcgtcgtcaagattagcggt
tccgtccccgccgcctacgtgtacgtggagaacatggttgccggtgcggccaccgaggag
tccttgcaggaccggatccgcctggcccaggacggcgccgtcacggtgttgctgatcgtc
aatcccgacaccggcaagatcgaagaggacccggagtactttgcggtgggcttcaacctc
accgacaaggacatcgagaaggccactggcatcgtggaaaagacggttgccgggctccgc
ggtgaaaagaccggccacggcgccgaaaaggccattgccgacgccctgctgcgctggtcg
gaccgcgccctgcgacgcaagccggtttacacggtcatcatcgtagaagcgtaa
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