Arthrobacter alpinus R3.8: AOC05_18330
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Entry
AOC05_18330 CDS
T04095
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aaq
Arthrobacter alpinus R3.8
Pathway
aaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC05_18330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaq03019
]
AOC05_18330
03400 DNA repair and recombination proteins [BR:
aaq03400
]
AOC05_18330
Enzymes [BR:
aaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOC05_18330
Messenger RNA biogenesis [BR:
aaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOC05_18330
DNA repair and recombination proteins [BR:
aaq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AOC05_18330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
ALE93819
UniProt:
A0A0M3UH40
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All DBs
Position
4012338..4014500
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AA seq
720 aa
AA seq
DB search
MIPSQSPSLPPATVETSATREQALVVLRKLVGRADAEFHDGQFEAIEALVDAGRRALVVQ
RTGWGKSAVYFVSSLLLRARGAGPTLIVSPLLALMRDQVAAAERAGVRAMAINSANATEW
DLVSAALAADEVDVLLVSPERLTNPSFRENQLPTLIRRTGLLVIDEAHCISDWGHDFRPD
YRRIADLIARLPPSVPVLATTATANSRVVADIEEQLGAGVFTIRGPLARKSLRLGVLRLA
DSRDRLGWLLTHLPELPGSGIIYTLTVSAAEDTGRLLAEAGHVVKAYTGRTDTMEREALE
EALKDNQVKALVATSALGMGFDKPDLGFVIHLGAPSSPVAYYQQVGRAGRGSANADVLLM
PGAEDQDIWQYFATASMPAQDKAMAVLEALGAAAKPMSTPALEARVDLRRTPLELLLKVL
AVDGAVRRVSGGWESTGQPWVYDSDRYERIAQARVDEQQSMMVYEKMSGCRMEYLAAALD
DTTAAPCGRCDSCAGRWFPTDIGSGAVEAASESLSHAGLPIEPRTLWPTGMDRLGVPVKG
KLKAEEQVAQGRVLARMTDLGWGNSLRAIFAAGAPDAPLDPAVAQAVVGVLRDWGQARWA
GAGRPVAVVSMPSRTKPELVRSLAQTMCEIGRLPYLGELSLEFGGPTGRRGGNSAYRLAG
VWDRLAVGPELAAALVAYPGGPVLLVDDLVDSRWTLTVAGRALRLAGATQVLPLVLAQAG
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgatacctagccagtccccgtccctgcctccggccaccgttgagacttccgccacccgt
gagcaggcgttggtggtgttgcgaaagctcgtgggacgggcggacgcggaattccacgac
ggccagtttgaggccatcgaggcgctggtcgacgccggccggcgggccttggtggtccaa
cgcaccggctgggggaagtcggctgtgtacttcgtctcgtccctgcttctacgtgcccgg
ggcgccggcccaaccttgatcgtttccccgctgctggctctgatgcgtgaccaggtggcg
gcagcagaacgggccggcgtgcgtgccatggctatcaactcggccaacgccaccgagtgg
gacctggtctccgcggccttggcagccgacgaggtggatgtgctgctggtctccccggaa
cggctgaccaacccgtccttcagggaaaaccagctgccaaccctgatccggcgcacgggc
ctgttggtgattgacgaggcccactgcatctccgactggggccatgacttccggcccgac
taccgccggatcgctgaccttattgcgcggctgccgccgtcggtcccggtcctggcgacc
acggccacggccaattcccgggtggttgcagacatcgaggaacaattgggcgccggcgtg
ttcaccatccggggtccgctggcacgcaagtcgctgcgcctgggcgtgctgcgcctagcc
gattcccgggaccggctgggctggttgctgacgcacctgcccgagctgcccggcagcggc
atcatctataccctgacggtctccgcggccgaggacaccggacgacttttggcggaggcc
gggcatgtggtcaaggcgtacacgggacgcaccgacaccatggagcgggaggccctggaa
gaggcgctcaaggacaaccaagtcaaggcgctggtggctaccagcgccctcggcatgggg
ttcgacaaaccagatttggggttcgtgattcacttgggtgcgccgtcatccccggtggcc
tactaccagcaggtgggccgtgccggccgcggaagcgccaacgccgacgtgctgttgatg
cccggggctgaggatcaggacatctggcagtatttcgcgacggcttcgatgcctgcccag
gacaaggcgatggcggttttggaggccctgggcgcggcggccaagcccatgtccaccccc
gcactggaggcgcgtgtggacttgcgccgcaccccgctggaactgctgctgaaggtgctg
gcggtggacggggccgtgcggcgggtctccggcggctgggagtcgaccgggcagccatgg
gtttatgacagcgaccgctacgaacgtattgcccaggcccgtgtggacgaacaacagtcc
atgatggtgtacgaaaaaatgtccggctgccggatggaatacctcgccgctgccctggat
gacaccacggcagcgccctgcgggcggtgtgattcatgtgccgggcggtggttccccacg
gacatcggctccggtgccgtggaggcggccagcgaatccctgagtcatgccggcctgccc
attgagccgcgcaccttgtggcccacgggcatggacaggctgggcgttccggtgaagggc
aagctcaaggcggaggaacaagtggcgcagggtcgggtgctggccaggatgacggacctg
ggctggggcaactccctgcgggccatatttgccgcaggcgccccggacgcgccccttgat
cccgccgtggcgcaggccgtggtgggcgtgctgcgcgactggggccaggcccggtgggcc
ggcgccggccgtcccgttgcggtggtgtcgatgccgtcgcggaccaagccggaattggtg
cgctcgctggcccagaccatgtgcgagattggcaggctgccctacctgggtgagctgtcc
ctcgaatttggcgggcccaccgggcgccgtggcggcaacagcgcctaccgattggcgggc
gtgtgggacaggctggccgtggggccggagcttgccgccgcccttgtcgcctacccggga
gggccggtcctgctggtcgatgacctcgtcgacagccgctggaccctcaccgttgccggc
cgggcgctgcgcctcgccggggccacccaggtgctgccgctggtcctggctcaggccggc
taa
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