Anatilimnocola aquadivae: NA78x_005092
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Entry
NA78x_005092 CDS
T11843
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aaqd Anatilimnocola aquadivae
Pathway
aaqd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaqd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NA78x_005092 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaqd03021
]
NA78x_005092 (rho)
03019 Messenger RNA biogenesis [BR:
aaqd03019
]
NA78x_005092 (rho)
Transcription machinery [BR:
aaqd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NA78x_005092 (rho)
Messenger RNA biogenesis [BR:
aaqd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NA78x_005092 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Mor
AAA_25
Motif
Other DBs
NCBI-ProteinID:
XRN64464
LinkDB
All DBs
Position
complement(6467062..6468585)
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AA seq
507 aa
AA seq
DB search
MGKKKFRPRSSGGRGGSQGGGYGGGGGYRDRDGYGGGGGGGGYGGGGGNGYGGGGGGGGG
GGNRSRRRRRPPGQGGPPGGPGGEGGERRPLPGDDTGIPGEIPFGGEAAPDGYNGAPAGA
GGAYPVPAGAEIQLEQGFGLLEMHPNGYGFLRSPENFYNRERSDPFVPGTMIERFGLREG
VIIKGTVQPARKQQGPRLREIVDVDGMAPEDYLKIKNFDQKTPINPDKWFRLETGATPLT
TRVMDLLTPLGRGQRALIVAPPRSGKTILLQHASQAMTANYPEVKQFILLIDERPEEVTD
MRRNVKGEVVASSLDNDIESHVRLAQLVIERCKRLAEMGQDVFVLLDSITRLARAFNKYV
GNKRGDGIQSGGLGTRAMDIPKKLFATARAFEEGGSVTIMGTALIQTESKMDDAIFQEFK
GTGNMELVLDRKLAERRVYPAIDVQQSGTRREELLLPPEVLHAITMLRRTLSSMNPVDAM
EQLTKQLGKFKTNAEFIQLITKAGSRD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaagaagttccgtcctcgctcctcgggtggtcgaggtggctcgcaaggtggt
ggttacggcggcggtggtggataccgcgaccgtgatggctacggcggtggaggcggaggt
ggtggttacggtggcggcggtggcaatggctacggcggcggcggaggaggaggtggcggc
ggtggaaaccgttcgcgacgccgacgtcgtcctccaggccaaggtggcccgcccggcggt
cctggcggtgaaggtggcgaacgccgtcctttgcccggtgacgacaccggcattcccggc
gaaattccctttggcggcgaagctgctcccgatggctacaacggcgctcctgccggtgcg
ggtggtgcctatcctgtgcctgctggcgcggagatacagttggagcaaggttttggcctg
ctcgaaatgcatcccaacggttacggcttcttgcgtagccccgagaacttctacaaccgc
gaacgctccgacccgtttgtgcctggcacgatgatcgagcggtttggtctgcgcgaaggc
gtgatcattaagggaaccgtccagcctgcccgcaagcagcaagggccgcgcctgcgtgaa
atcgtcgatgtcgatggcatggcgcccgaagactatctgaagatcaagaatttcgatcag
aagacccccatcaatcccgataagtggttccgcctcgaaacgggcgcgactccgctcacc
acgcgagtgatggacctgctgaccccgctcggacgcggccagcgtgcactcatcgtcgct
ccgcctcgcagcggtaagacgatcctgctgcaacatgccagccaggcgatgacggccaac
tatcccgaagtgaagcagttcattctgctgatcgacgagcggccggaagaagtcaccgac
atgcgccgcaatgtgaagggcgaagtcgtagccagcagtctcgataacgacatcgaaagt
cacgttcgtctggctcaactcgtcatcgaacgctgcaagcgtttggccgaaatggggcaa
gacgtcttcgtgctgcttgattcgatcacgcgtctggctcgtgctttcaacaagtacgtg
ggcaacaagcggggcgacggcattcaatcgggcggtctcggcactcgtgccatggacatc
cccaagaagctgtttgctacggctcgtgccttcgaagaagggggctcggttaccatcatg
ggtaccgcgctcatccagaccgaaagcaagatggacgacgcgatcttccaggagttcaag
ggtacgggcaacatggaactggtgctcgaccgcaagctggccgaacgtcgcgtttacccc
gcgatcgacgtgcaacaatccggcactcgccgcgaagaattgctgctgccgccggaagtg
ctgcacgccatcaccatgctgcgtcgcaccctgtcgtcgatgaatcccgtcgatgccatg
gagcaactgaccaagcaactcggcaagttcaagaccaatgccgagttcattcagttgatc
accaaggctggttcacgagattag
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