Arcobacter aquimarinus: AAQM_0040
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Entry
AAQM_0040 CDS
T06604
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aaqi
Arcobacter aquimarinus
Pathway
aaqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAQM_0040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaqi03019
]
AAQM_0040
03009 Ribosome biogenesis [BR:
aaqi03009
]
AAQM_0040
Enzymes [BR:
aaqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAQM_0040
Messenger RNA biogenesis [BR:
aaqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAQM_0040
Ribosome biogenesis [BR:
aaqi03009
]
Prokaryotic type
rRNA helicases
AAQM_0040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
Ribosomal_L12_N
Motif
Other DBs
NCBI-ProteinID:
QKE24822
UniProt:
A0AAE7B3M9
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All DBs
Position
40632..42194
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AA seq
520 aa
AA seq
DB search
MTFNEFNFKEQLQKAIDDAGFKEPSPIQEQAIPFILAGKDIVGQAHTGTGKTAAFGLPIL
NKLKGKSGVEAVVIVPTRELAMQVSDEIYRFGKLLGINTATVYGGQAYARQIKLIENASV
IIATPGRFLDLLRGDKIDIKPDFVILDEADEMLDMGFLDDIKEIFTFLPKERQTLLFSAT
MPTAIKNLAKTILNEPEFVTLTKSDVTNSKITQTFYVVDERERDDALIRLYDYKNPSKSI
IFCRTKKEVDRLSTFMVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGL
DVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAVSIVTPHEFRMLQKIEKNIGTKLE
PKIVPNIDSVKVKKIAELKQQISEQEIKDYALALVEELKEEFDISTIAFKLASMISASTY
VQGNNNIGKSESDIKRLIENSSRYEGEGSSGRNSRGGRFGSRGGSRSGDSRGGRSDRNSR
GGDRNRAPRGDRPASDRSNKPRTDRPRSDRPSGDRSRKRD
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaatgaattcaatttcaaagaacaattacaaaaagcaatcgatgatgcaggt
tttaaagagccaagtcctattcaagaacaagctattccgttcatattagcaggtaaagat
attgttggtcaagcacatacaggtacaggtaaaacagcagcatttggacttcctatttta
aataaattaaaaggaaaatcaggagttgaggctgttgttattgttccaacaagagaactt
gcaatgcaagtttcagatgaaatatatagatttggaaaacttttgggaattaatacagca
acagtttatggtgggcaagcgtatgctagacaaattaaattaattgaaaatgcaagtgtt
attattgcaactcctggtagatttttagatttattaagaggtgataaaattgatataaaa
cctgattttgttattcttgatgaagctgatgagatgcttgatatgggatttttagatgat
attaaagaaatttttactttcttaccaaaagagagacaaactctattattctctgcaact
atgccaacagctattaaaaatcttgcaaaaactatcttaaatgagccagaatttgtaact
ttaacaaaaagtgatgtgacaaattcaaaaattactcaaactttctatgttgttgatgaa
agagaaagagatgatgctcttattagactatacgactataaaaatccaagtaaatcaatt
attttctgtagaactaaaaaagaagtggatagattatcaacatttatggtttctcaagga
tttatggcaaaaggtcttcatggtgatatggaacaaagacaaagagaagaggctattaga
gcatttaaaacttcaaaattagaaattttaattgcaacggatgttgcagcacgtggactt
gatgtaaatgatgtatcacacgtatttaattatcatttaccgtttgattcagagtcttat
gttcatagaattggaagaactggtcgtgctggtaaagaaggagtagctgtatctattgta
actcctcatgaatttagaatgttacaaaaaatcgaaaaaaatataggaactaaattagaa
cctaaaattgttccaaatattgattctgtaaaagttaaaaaaatagcagaactaaaacaa
caaattagtgagcaagagataaaagattatgctttagcattagttgaagaattaaaagaa
gagtttgatatttcaacaattgcatttaaattagcttcaatgatttcagcatctacttat
gttcaaggaaacaataatattggtaagtcagagtctgatataaaaagattaatagaaaat
tcatcaagatatgaaggtgaaggttcatctggaagaaattcaagaggtggaagatttggc
tcaagaggcggttcaagaagtggtgattcaagaggtggaagatcagatagaaactcaaga
ggtggtgatagaaatagagcaccaagaggtgatagaccagcttctgatagatctaataaa
ccaagaacagacagaccaagaagtgatagaccatcaggtgacagaagtagaaagagagat
taa
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