Arcobacter aquimarinus: AAQM_0471
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Entry
AAQM_0471 CDS
T06604
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaqi
Arcobacter aquimarinus
Pathway
aaqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAQM_0471 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaqi03400
]
AAQM_0471 (mfd)
Enzymes [BR:
aaqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAQM_0471 (mfd)
DNA repair and recombination proteins [BR:
aaqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAQM_0471 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_30
DUF6794
Motif
Other DBs
NCBI-ProteinID:
QKE25244
UniProt:
A0AAE7B0U3
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All DBs
Position
472675..475662
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AA seq
995 aa
AA seq
DB search
MKNIYEFLKNLKEEKRLKKCQLLIVNDDRQAQIASDIVSYLGFKPFVLADFRANFGDDLL
SFSDELHEITKALGDFYSYKKQDKILISPIRTISYPLPKEKCFESFTINFADTLHLEELK
SKLYNWGYYFVDIVTSEGEVSIRGDIIDICPLGSEAGYRVSLFDDEVESIRKFDIEDQKS
SKEEIESFSINPAFLALDEASFEEINEQVQTVSSDAFIKDIHSLGFWYLNDLGEYLPQNL
SSFITQEALEELDEVYVFEEKRINKDKFLLTPQIYNSKNYQEINPANVKEFISFHKDKKI
TIISGTEAKVKGYDLDLSDKNIKYIFDNQIINLVSDSEVIISLNKEVKKRRKKKVKLVLD
ELQYNDFVVHEKHGIGQYKGIEPVTVMGAKRDFVIVQYQGEDKLLIPVENIDLIDRYVAD
GNSYAVVDKLGKGSFAKLKEKVKDRLFAIANDIIKLAAARELVNGIKINTDKKILEDFPK
SAGFEYTKDQKRSIKEIFNDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVIIDGYQAIFV
CPTTLLATQHYHGIKKRFEEFGINVAKLDGKTTAKEKTAIKKGLENGDIKLVIGTHSLLD
IKTSNLALVIIDEEHKFGVKQKEKLKHLREDVHIFSMSATPIPRTLNLALSKLKGMSSLL
TPPSERIGVRTYVKEYSEKLIKEIILREKRRGGQLFYVHNNIASIEAKKADIEAIIPNIK
IDIIHSQIKPDHAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIADLH
QLRGRVGRSNKEGYCYYVVEDKKQITDDAVKRLVALESNSYLGSGTALAHQDLEIRGGGN
IIGEAQSGHIKQIGYGLYLKMLEDALASLSGENKPEKKSVDIKLAISAYISDDYINEDRV
RLELYRRLSKAIDIQEVYTIEEEMEDRFGKPDVVTKQFIELIIIKILALKLGIQTISSYE
MNITFTKSDDIKETIKSPSKDDDDIIATTLRYLRK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatatttatgaatttttaaaaaatttaaaagaagaaaaacgattaaaaaagtgt
cagcttttaatcgtaaatgatgatagacaagctcaaatagcttctgatatagtttcatat
ttaggttttaagccgtttgttttagctgattttagagcaaattttggtgatgacttactc
tcttttagcgatgaattacatgaaattacaaaggctttaggagatttttactcatataaa
aaacaagataaaatcttaatctctccaataagaactatctcttatcctcttccaaaagaa
aaatgttttgaaagttttactataaattttgcagatactttacatttagaagaattgaaa
tcaaaactttataattggggatattattttgtagatattgttacaagtgaaggtgaagta
tcaattaggggagatattattgatatttgcccacttggtagtgaagctggatatagagta
agtctatttgatgatgaagttgaaagtattagaaaatttgatattgaagatcaaaaatca
tcaaaagaagagatagaaagtttttctataaatccagcattcttagcacttgatgaagca
tcttttgaagagataaatgaacaagttcaaacagtttcaagtgatgcgtttataaaagat
attcactctttaggattttggtatttaaatgatttaggggaatatttacctcaaaattta
agctcatttattactcaagaagcattggaagagttggatgaagtttatgtttttgaagaa
aaaagaataaacaaagataagtttttattaacacctcagatttacaatagtaaaaattat
caagagataaatccagcaaatgtaaaagagtttatctcttttcataaagataaaaaaatc
acaattatctctggaactgaagcaaaagtaaaaggttatgatttagatttaagtgataaa
aatatcaaatatatttttgataatcaaatcataaaccttgtaagtgacagtgaagtaata
atctctttaaataaagaggtaaaaaaacgaagaaagaaaaaagtaaaacttgttcttgat
gaacttcaatacaatgattttgtagtacatgaaaaacatggaattggtcaatacaaagga
attgaacctgttactgtaatgggagcaaaaagggacttcgtaattgttcaatatcaagga
gaagataaacttttaattcctgttgaaaatatagatttaattgatagatatgttgctgat
ggaaactcttatgctgttgttgataagcttggaaaaggctcatttgctaaactaaaagaa
aaagttaaagatagactttttgctattgcaaatgatattataaaactagcagctgcaagg
gaacttgtaaatggtatcaaaataaatactgataaaaaaatccttgaagattttccaaaa
agtgcgggatttgaatatacaaaagaccaaaaaagaagtattaaagagatatttaatgat
ttaagttcaggaagagttatggatagacttctttctggtgatgttggttttggaaaaact
gaagttgctatgaatgctttacttgctgttatcatagatggttatcaagcaatttttgta
tgtcctacaacacttcttgcaactcaacactatcatggaataaaaaagagatttgaagag
tttggaataaatgttgctaaacttgatggaaaaacaacagcaaaagaaaaaactgctatc
aaaaaaggtttagaaaacggtgatataaaactagttattggaactcactcattacttgat
ataaaaacttctaatttagctttagttattattgatgaagagcataaatttggagtaaaa
caaaaagagaaattaaaacatttaagagaagatgtacatattttctctatgagtgcaaca
ccaatcccaagaactctaaacctagctttatcaaaactaaaaggtatgagttcccttcta
acacctcctagtgaaagaataggtgttcgtacttatgtaaaagagtatagtgaaaaatta
atcaaagagataattttaagagaaaaaagaagaggtggacaacttttttatgttcataat
aatattgcttcaattgaagctaaaaaagctgatattgaagcaataattccaaatattaaa
atagatattattcactctcaaataaaacctgaccatgctgaaaaaattatagaagccttt
gaaaacaaagagtttgatattttactagctacttcaatagtagaatcaggaattcacttg
ccaaatgcaaactctattattattgatggtgcagatagatttggaattgcagatttacat
cagcttagaggaagagttggacgaagtaataaagagggatattgttattatgtggttgaa
gataaaaaacaaatcacagatgatgcagtaaaaagacttgtagctcttgaatcaaactca
tatttaggaagtggaacagctttagctcaccaagatttagaaatcagaggtggtggaaat
atcataggtgaagctcaaagtggtcatataaaacaaataggatatggtttatatctaaaa
atgttagaagatgcacttgcaagtctaagtggtgaaaataaaccagagaaaaaatctgtt
gatataaaacttgcaatttctgcttatattagtgatgattatataaatgaagatagagta
agacttgaactttatagaagattgagtaaggcaattgatattcaagaggtttacaccata
gaagaagagatggaagatagatttggaaaacctgatgtagtaacaaaacagtttatagag
ttaattatcataaagattttagctttaaaacttggaattcaaactattagttcatatgag
atgaatattacatttacaaaatcagatgatataaaagagactataaaaagtccaagtaaa
gatgatgatgatattatcgctactacattgaggtatcttagaaaataa
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