Arcobacter aquimarinus: AAQM_1237
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Entry
AAQM_1237 CDS
T06604
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aaqi
Arcobacter aquimarinus
Pathway
aaqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAQM_1237 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaqi03019
]
AAQM_1237 (pnp)
03016 Transfer RNA biogenesis [BR:
aaqi03016
]
AAQM_1237 (pnp)
Enzymes [BR:
aaqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AAQM_1237 (pnp)
Messenger RNA biogenesis [BR:
aaqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AAQM_1237 (pnp)
Transfer RNA biogenesis [BR:
aaqi03016
]
Prokaryotic type
tRNA degradation factors
AAQM_1237 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
MIC19_MIC25
Motif
Other DBs
NCBI-ProteinID:
QKE25988
UniProt:
A0AAE7E0G5
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All DBs
Position
1257181..1259352
Genome browser
AA seq
723 aa
AA seq
DB search
MSIVCEFDLNGKQEIFEFNKVAKQANGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQ
YIEKTYAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADK
DVDLQTLSLNAANAALYTSNLPIKKSVCGVRVGRIENNYVINPTPEQIANSTLDLYVAGS
KDELLMIEMKTISSSELIEVDIEAFTKVHNANEMNEDTLVEAITFAQNALKEANLTYEKA
FEEVSKEKVQVELIKFTIEESVINYVRDNFSNEIKEAIKKLAKSERATQLKDVAKMIASN
EYCTTNELEFNTIYEAVSIVKREIVRKMIVNDKVRADGRGLKDVRPISIETNILPSTHSS
CLFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMERFMVHYNFPGFSVGEAKPMFGIGR
RELGHGNLAKKALETTIDDDYNETVRLVSEILESNGSSSMATVCGGSLALKAAGVPISNL
VAGVAMGMVVENDKYSILTDIMGLEDHDGDMDFKVAGTNKGITALQMDIKLGGIELSVLK
EALLQAKEGRDHILGLMEEAAKDIVPSGALPLVEQFIIDPSKFMVIIGKAGATIKEIIER
FTVSIDLDRDNGIVKVSGDNKQNIMDACEHIKTISNNASPRKETKNIDFEKLYQVDEIVT
GKVERVVDFGAFILLPKGGEGLLHISKISKERVNNVSDILSVGQDIEVKVLKVKKDRIEL
SSN
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatagtttgtgaatttgatttaaatggaaaacaagaaatttttgaatttaataaa
gttgctaaacaagcaaatggagctgttttagcaaaaataggaaatgctgtagttttggct
actgttgtaagtgaatttgataatcctgttagtgaagattttacacctttaactgttcaa
tatatagaaaagacttatgcagcagctaaattacctggtggatttataaaaagagaagga
aaaccaagtgattttgaaactttaacatcaagagtaatagatagaagtttaagacctctt
tttccaaaaggttacgtatatcctacaactattacagttatggttttaagtgcagataaa
gatgttgatttacaaacattatcattaaatgctgcaaatgctgctttatacacatcaaat
ttaccaatcaagaaatctgtttgtggtgtgagagttggaagaattgaaaataattatgta
atcaatccaacaccagaacaaatagctaattctactttagatttatatgttgctggatct
aaagatgaattattaatgatagaaatgaagactatatcttctagtgagttaattgaagtt
gatattgaagcttttacaaaagttcataatgcaaatgaaatgaatgaagatacattagtt
gaagcaattacttttgctcaaaatgcattaaaagaagcaaatttaacttatgaaaaagct
tttgaagaagtttcaaaagaaaaagttcaagttgaattaattaaatttactattgaagag
tctgtaataaattatgttagagataatttttcaaatgaaataaaagaagctataaaaaaa
cttgcaaaaagtgaaagagctactcaattaaaagatgttgcaaaaatgatagcttcaaat
gaatattgtacaactaatgaattagaatttaatacaatttatgaagcagtttcaattgta
aaaagagaaattgtaagaaaaatgatagtaaatgataaagtaagagcagatggaagaggt
ttaaaagatgttagaccaatttctattgaaacaaatattttaccatcaactcactcttct
tgtttattcacaagaggtgaaacacaagcattagttataggaactattgcaggaccaaaa
gatggacaaatgtatgaagtattaactgataaatcaacttctatggaaagatttatggtt
cattataactttccaggtttctctgttggtgaagctaaacctatgtttggaataggaaga
cgtgaattaggacatggtaatttagctaaaaaagcccttgaaactactattgatgatgat
tacaatgaaacagtaagattagtttctgaaattttagaatcaaatggttcttcatcaatg
gcaactgtttgtggaggttctttagcgctaaaagcagcaggtgtacctatatcaaatctt
gtagctggtgttgcaatgggaatggtagtagaaaatgataaatattctattttaacagat
attatgggacttgaagaccatgatggagatatggattttaaagttgcaggaactaataaa
ggaattactgctttacaaatggatattaaacttggtggaatcgaattatcagttttaaaa
gaagcattacttcaagcaaaagagggtagagatcatattttaggtttaatggaagaagct
gctaaagatattgtaccaagtggtgcattaccattagttgagcaatttataatagatcca
agtaaatttatggttattataggaaaagcaggtgctacaataaaagaaatcatagaaaga
tttactgtttctattgatcttgacagagataatggaattgttaaagtaagtggagataat
aaacaaaatattatggatgcttgtgaacatataaaaactatatctaataatgcatcacca
agaaaagaaacaaaaaatatagattttgaaaaactttatcaagttgatgaaatagttaca
ggtaaagttgaaagagttgtagattttggagcatttatacttttaccaaaaggtggagaa
ggattattacatatttcaaaaatttctaaagaaagagtaaataatgtatcagatatctta
tctgttggtcaagatatagaagtaaaagttttaaaagtaaaaaaagaccgaattgaatta
tcttcaaattaa
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