Alcaligenes aquatilis: D3M96_06910
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Entry
D3M96_06910 CDS
T05678
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aaqu
Alcaligenes aquatilis
Brite
KEGG Orthology (KO) [BR:
aaqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaqu03019
]
D3M96_06910 (hrpA)
Enzymes [BR:
aaqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D3M96_06910 (hrpA)
Messenger RNA biogenesis [BR:
aaqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D3M96_06910 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_23
SLFN-g3_helicase
ABC_tran
AAA_30
ResIII
PhoH
AAA_16
SRP54
AAA_25
TsaE
Motif
Other DBs
NCBI-ProteinID:
AYN20286
UniProt:
A0A3G2HT35
LinkDB
All DBs
Position
1523388..1527179
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AA seq
1263 aa
AA seq
DB search
MHESDELTENPPSLPTISYPDDLPVSARRAEIAQAIKDHQVVIVCGETGSGKTTQLPKIC
LELGRGLQGKIIGHTQPRRLAATSVAKRIAQELQSEIGDWVGYQIRFNDKTGPRSAIKLM
TDGILLAESQRDPLLSRYDTIIIDEAHERSLNIDFLLGFLKQLLPRRPDLKLIITSATID
AERFAEHFVHKGKKAPVIEVSGRLYPVDIVYRPILDPSLVDAEERRSASEEERDLMQGIV
DAVQECARHGTGDILVFLPGEREIRETTEALEKEKPINIVILPLFARLSQADQERIFRPK
GNARRVVLATNVAETSLTVPGIRFVVDSGLARIKRYSWRNKVEQLRIEAISQASASQRAG
RCGRIGPGICIRLYDEQDFKSRPPFTDPEILRSSLASVILRMKALHLDDVETFPFVEPPT
GRAIADGYQILQELGALDEQQRLTKVGRSLAKLPVDPRVARMILAGHEHHCLTEMLIVAS
AMSVQDPRDRPVHEREAANQAHARFNDDKSEFLSYVKLWNWLEALSQEQSSQRKFANSVK
QALLSPLRIREWRDVHTQLRSLVQEQRWVANPSAATYEQVHLALLTGLIGNIGYKSEETG
VYQGTRELRFVIHPGSKLVKKAGRWILAGELMETTRLFARCVARIEPQWIEKVGAHLLRK
TWGDPRWEKKAGQVVANERATLYGLLIYSGRRIHFGRIDPVQARELFLRQALVPGEIDSN
LPFLRHNRQQIQAVERLEHQSRRPDILVDEELIYAFYDQRIPKDVYQTATLEKWFKGLSK
EQAKGLELNRDELMQHDAAGITTEVFPRSVEWQGVKMALDYHFEPGSVRDGVTLSVPLFA
LNQIDAARCEWLVPGMLKEKVLALLKSLPQRIRRHCVPLPDYAAAFHQRWFEKAADPGMS
LLDAISQDMWAHVKQRPQRSDFKPETLATHLFMNFRVIDEHGRMLSGGRNLDQLKAEHGR
QAQASFQQMAASDEQVAQVLDHEQLTSWSFGELPELMEIKRKGRSFIGYPALIDKKTHCD
LDVFDDPAQAQRQHRLGLRRLFRLALREQVRFLEKNITDLTRISMLYINLGTQEQLRDQI
IDVALEQSCMMEPWPKNQTEFEARVQEGRSRLGLVAQEVARLAGQILNEWSAAQKKLAQI
KAHPEALKDIQQQLNALMPTMFLESNEYAQLAHMPRYLKAVQTRVDKLRADPARDQRLMQ
DMSVLLTKYQRAVAALKGATDSGLRDFRWMLEELRVSLFAQELRTPMPVSVKRLEKAWAA
LQR
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagtccgacgaattgactgaaaatccaccctctttaccaacaatttcctatcct
gatgacctgccagtcagcgcccgacgggccgaaattgcccaggcaatcaaagaccatcag
gtggtcattgtgtgtggtgaaaccggctcgggcaaaaccacccaattacctaaaatctgc
ctggagctggggcgcggcctgcagggcaagattattggtcatacccagccgcgccgtctg
gcggccacatcggttgccaagcgtattgcccaggagctgcaatcggagattggtgactgg
gtagggtatcaaattcgtttcaacgacaagaccggaccgcgttcggccatcaagttgatg
acggacgggatcttgctggccgagtcccagcgcgatcccttgttaagccgctacgacacc
atcattattgacgaggcccatgaacgcagtctgaacattgactttctgctgggcttttta
aagcagttgctgccacggcgtccggatttaaagctgatcatcacctcggccacaattgat
gccgagcgttttgcggagcactttgtccacaagggcaagaaggcgcccgtgattgaagtg
tcgggccgtctgtatcccgtggatattgtgtatcgcccgattctggacccgtccttggtc
gatgccgaagaacgccgttctgcctccgaggaagagcgggatctgatgcaaggcattgtg
gatgcggtgcaggaatgcgcccggcacggcactggcgatattttggtgttcttgcccggc
gagcgcgagatccgtgaaaccaccgaggcactggaaaaagaaaagcccatcaatatagtg
atcctgcctttgtttgcgcgtctgtcgcaggcggatcaggaacgtattttccgccccaaa
ggcaatgcgcgccgtgtggtgctggcgaccaacgtggccgaaacttccttgaccgtgcct
ggcatacgctttgtggtcgatagcggcctggcgcgtatcaagcgctattcctggcgcaac
aaggtcgagcagttgcgcatcgaagcgatcagccaggcctcggccagccaacgggcaggg
cgttgtggtcgtattggtcccggtatctgtattcgtctgtatgacgagcaggacttcaag
agccgccccccctttaccgatcccgagattctgcgctcctcgctggcctcggtgattctg
cgcatgaaggccctgcatctggacgatgtggaaaccttcccctttgtggagccaccgact
ggccgcgccattgccgatggctatcaaattttgcaagagctgggcgcgctggatgaacag
cagcgcctgaccaaagttggccgttccctggccaagctaccggtggacccacgtgtggcc
cgcatgattctggccggtcacgaacatcattgtttgacggaaatgctgatcgtggcctcg
gccatgtccgtgcaagacccgcgagatcgtcctgtccatgaacgtgaagcggccaatcag
gcccatgcccgtttcaatgatgacaagtccgagtttctgtcctatgtgaagctgtggaac
tggctggaagccttgtcacaggagcaaagctcgcagcgcaagtttgccaatagcgttaaa
caggccctgctgtcacccttgcggattcgggagtggcgtgatgtccatactcaattgcgt
agcctggtgcaggaacagcgctgggtcgccaatccctcggctgccacttatgagcaggtg
catctggccttgctgacggggctgatcggcaatattggctacaagagcgaagaaaccggc
gtctatcaaggcacgcgtgagctgcgttttgtgattcaccccggttccaagctggtcaag
aaagcaggccgctggattctggccggcgagctgatggaaaccacgcgcctgtttgcccgc
tgtgtggcgcgtatcgaaccgcaatggattgaaaaagttggcgcccatttgctgcgtaaa
acctggggcgacccgcgttgggagaaaaaggccggtcaggtcgttgccaatgagcgtgcg
accttgtacggcttgctgatttacagtggccgtcgcattcactttggccgcattgatccg
gtgcaggcccgtgaattgttcttgcgtcaggctctggtgccgggcgagattgattccaac
ttacctttcctgcgccataaccgtcagcaaattcaggcggtagagcgtttggagcatcaa
tcgcgtcgtcctgacattctggtggatgaggaactgatctacgccttttacgatcagcgc
atccccaaggacgtgtaccagaccgccacattggaaaaatggttcaagggtttgtccaag
gaacaggctaagggcctggagctgaaccgcgacgagctgatgcagcacgacgcagccggt
atcaccaccgaggtgtttccgcgctcggttgaatggcagggcgtgaagatggcgctggat
tatcacttcgagccgggttcggtgcgcgatggggtgaccttgagtgtccccttgttcgcc
ttgaaccagatcgacgccgcgcgttgcgaatggctggtgcccggcatgttgaaggaaaaa
gtgctggctttgctgaaatccttgccacagcgtattcgccgtcattgtgtgcccttgccc
gattacgcggccgcctttcaccagcgctggtttgaaaaagcggccgatcccggaatgagc
ctgctggatgcgatttctcaggatatgtgggcgcacgtcaaacaaagaccacagcgcagc
gatttcaagccggaaacgttggcgactcacttgttcatgaacttccgagtgattgacgag
catggtcgcatgttgtcgggcggccgtaatctggaccagctcaaggccgaacatggccgt
caggcgcaggcgtccttccagcagatggctgccagcgacgagcaagtggcgcaggtgctg
gatcacgagcaactgaccagttggagctttggcgaactgcccgagctcatggaaatcaag
cgcaagggtcgcagctttattggttacccggccttgatcgacaagaaaacccattgcgat
ctggatgtatttgacgacccggctcaggcccagcgtcagcaccgtttgggtttgcgtcgc
ttgttccgtttggccctgcgcgagcaagtgcgctttctggaaaagaatattacggatctg
acccgcatcagcatgctgtatatcaatctgggtacgcaggaacaattgcgggatcagatt
attgatgtggccctagagcaatcctgcatgatggagccgtggccgaaaaaccagaccgag
tttgaggcacgcgtacaagaaggtcgcagtcgcttgggtctggtggcccaggaagtagcg
cgtctggccggtcagattctgaatgagtggagtgccgcccagaaaaaactggcgcaaatc
aaagctcatcccgaggccttgaaagacatacagcagcaattgaatgccttgatgcccacc
atgtttctggaaagcaatgaatacgcgcagttggctcatatgccgcgctacctgaaagcc
gtacaaacccgggtggacaagctgcgagccgatccggcccgcgatcaacgcttgatgcag
gatatgtcagtcttgctgacgaagtaccagcgtgccgtggcggcgctcaaaggcgccacc
gatagcggtttgcgggactttcgctggatgctggaagagttgcgcgtgtccttgtttgcg
caagaattgcgtacacccatgccggtttcggtcaagcgtctggaaaaagcctgggctgcc
ttgcagcgctag
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