Alcaligenes aquatilis: D3M96_12120
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Entry
D3M96_12120 CDS
T05678
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aaqu
Alcaligenes aquatilis
Pathway
aaqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3M96_12120 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaqu03019
]
D3M96_12120 (rnr)
03016 Transfer RNA biogenesis [BR:
aaqu03016
]
D3M96_12120 (rnr)
Enzymes [BR:
aaqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D3M96_12120 (rnr)
Messenger RNA biogenesis [BR:
aaqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D3M96_12120 (rnr)
Transfer RNA biogenesis [BR:
aaqu03016
]
Prokaryotic type
tRNA degradation factors
D3M96_12120 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
CSD
Motif
Other DBs
NCBI-ProteinID:
AYN21205
UniProt:
A0A3G2HVW5
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All DBs
Position
complement(2661093..2663570)
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AA seq
825 aa
AA seq
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MNKKHQDSTEDRIQSTGRYELPPDFDPDTPTREVILAGLREDADGLTMQALAKKLGLGKD
ITVGFERRVRAMERDGQLLISPEGKIRKNSQTGFIAGKVLGHRDGFGFLQRDDGQPDLFL
SPREMAKVLHGDHVMVRIVGEYRGKPDASIVEVTARHTSKLVGRFLRERGTFIVVPEDQR
IKHDILIPSGDQGEAEPGQVVTVAITQQPERHRQPLGRVIEVLGEIDDPGMEIEIAVRKF
EVPVDFSEKALKQAARIPAKVKPSEYKGRVDLRDVPFITIDGEDARDFDDAVYCERVDIG
TGKRSRWAWRLLVAIADVSHYVRSGDALDEDALERGTSVYFPRRVIPMLPESLSNGICSL
NPSVDRLVMVCDMVVLADGAKSGTVSAYQFYEAVIHSHARTTYSDIWSALQQPTGPAAAQ
IQHVLEPVQNLYALYRLLAEQRTARGAIDFDTVETKIVCNPLGRIERIEPLVRNDAHKLI
EECMLAANTCAADFIARSRRNGLYRVHEGPTPPKLEALREYLRSLGLTLEGGDEPTSADY
AKVVAAARGRSDFAIIQTMCLRSMQQAIYSPEKTGHFGLAYSQYAHFTSPIRRYPDLLVH
RVIKGILKGQRYIPAIAEEPGDAALPASKRDFARWEKLGALLSARERRADEASKDVEAWL
KCWFVKEHVGEEYSGKISGVTSFGLFVTLDTLYVEGLVHVSELGADYFQYNETSNELRGE
RTGLRYRLTDAVQVQVARVDLEARRIEFRLVKGVGYKAVKAAADASDPSERPIKKAASTK
PLALKGTTASQRRASQKRAERDEKRSTEKAAKSAKSTRSPRGRRR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaaaaacaccaagacagtactgaggaccgtattcaatcaacgggccgttatgag
ttgccgcctgactttgacccggataccccgacgcgggaagtgatcttggcggggctgcgc
gaggatgcagacggcctgaccatgcaggctctggcgaaaaagctgggcctgggcaaagac
attacggtgggttttgagcggcgtgtacgcgcaatggagcgcgatgggcaactgctgatt
tcccccgaaggcaagattcgcaaaaatagccaaactggctttatcgcaggcaaagtgttg
ggtcatcgcgacggttttggtttcttgcagcgcgacgatgggcagcctgatctgttcttg
tcgccacgggagatggccaaagtgttgcacggcgaccacgttatggtgcgtatcgtcggt
gaataccgtggcaaaccagatgcctcgattgtcgaagtcactgcgcgtcataccagtaag
ctggtgggccgtttcttgcgcgagcgtggcacgtttatcgtggtgcccgaagatcagcgt
atcaagcacgacatcctgatcccaagtggagatcagggcgaggccgagcccggccaggtc
gtcacggtagcgatcacccagcagcccgagcgccatcgccagcctttggggcgtgtcatt
gaagtgctgggggaaattgatgatcccggcatggaaatcgaaatagcggtgcgcaagttt
gaagtgccggtcgatttttctgagaaagcccttaagcaggcagcccgtattcctgccaag
gtaaagccatcggaatacaaaggtcgcgttgatctgcgcgatgtccctttcatcaccatt
gatggtgaagacgcacgggactttgacgatgcagtgtattgcgaacgcgttgatattggc
acgggcaaacgctcgcgctgggcgtggcgattactggtggcgattgccgacgttagccat
tacgtacgctccggcgatgccttggatgaagacgctctggagcggggcaccagcgtgtat
ttcccgcgccgtgtgatccccatgctgcctgaaagtctgtccaacgggatctgttccttg
aacccgtcggtagaccgtctggtcatggtgtgcgatatggtcgtattggccgatggcgcc
aaatccggcaccgtgtcggcctatcagttttatgaagcggtcattcactcacatgcgcgc
accacgtattccgatatctggagcgccctgcagcagcctacaggcccggccgccgcacag
attcagcatgtgctcgagcctgtgcagaacctgtatgccttgtaccgtttgttggccgag
cagcgcactgcacgaggtgccattgattttgatacggttgaaaccaaaatcgtgtgtaac
cccttgggtcgcatcgaacgtattgaaccactggtccgtaacgatgcccacaagctgatc
gaagagtgcatgttggcagccaatacctgcgctgccgacttcattgctcgtagccgtcgc
aatggtttgtaccgtgtgcatgagggcccaacgccgcccaagctggaagccttgcgcgaa
tatttacgtagcttgggtttgaccctggaagggggcgacgaaccgacttctgccgattac
gccaaagtggtggccgccgctcgtggtcgttccgacttcgccattattcagaccatgtgc
ttgcgttccatgcagcaggctatttacagcccggagaaaacgggtcactttggtctggct
tattcacaatacgctcacttcacttcgcccattcgtcgttacccggacttgctggtgcac
cgcgtcatcaaaggtattttgaaaggccagcgttacattccagcgattgccgaagagccg
ggcgatgccgccttgccagccagcaagcgcgattttgcacgctgggaaaaactgggtgcc
ttgttgtcggcgcgcgaacgtcgtgctgacgaggcctctaaagatgtggaagcctggctc
aagtgttggtttgttaaagagcacgtgggcgaggaatactctggcaagattagtggcgta
accagcttcggtttgtttgtgacgttggataccttgtatgtggagggcctggttcacgtc
tcggagctgggcgcagattacttccagtacaacgaaacctcgaacgagttgcgtggtgag
cgtactggtctgcgttatcgcctgaccgatgcggtacaagtgcaggtcgcccgtgttgat
ctggaggcgcgtcgtatcgagtttcgtctggttaaaggtgtgggctacaaagcggtgaag
gcagcggcagatgcgtctgatccgtccgagcggcccatcaagaaagcagcttcaaccaag
ccgctggctttgaagggcaccacggcctcccaacgacgtgcttcacaaaagcgggccgag
cgggatgaaaaacgcagtacggagaaggcagccaagtccgccaaatccacgcgcagccct
agagggcgacgccgatag
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