Alcaligenes aquatilis: D3M96_12345
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Entry
D3M96_12345 CDS
T05678
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aaqu
Alcaligenes aquatilis
Pathway
aaqu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aaqu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D3M96_12345 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaqu03021
]
D3M96_12345 (rpoD)
Transcription machinery [BR:
aaqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D3M96_12345 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
MitMem_reg
CYP38_PsbQ-like
Motif
Other DBs
NCBI-ProteinID:
AYN21243
UniProt:
A0A3G2HW16
LinkDB
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Position
complement(2709542..2711764)
Genome browser
AA seq
740 aa
AA seq
DB search
MTQTTGKTSTTVSRSAKKTLAATAKSGASSSVELDELHESGEPGAAPAKKAVKKAAAKKT
VAKKAAAKKTAAKAATGGRRGRPAKNANNDGIDFVDDDEMGEEEVIPDLKPVAKRGAKRA
KAEKDVFGVRGQLSPEEQEARRNRLKALIKLGKDRGYLTYSEINDHLPDDLVDVEAIDGI
IGTFSDMGISVYDQAPDADTLLMSDNAPMASSDDDVEDEAEAALTTVDSDFGRTTDPVRM
YMREMGSVELLTREGEIEIAKRIEDGLKHMVMAIAACPTTVNEILAYVQRVREGVMQIDE
VVDGLVDDDGEEYAGSGVSADDEDEGPAGGMSSKQIEYLRNKSLKKFDIIGEWFDKMRVS
FETDGYKSPGYVQAQETILNEFMGIRFTAKMVEKLADTMREQVAIVRQHEREILNICVDR
ADMPRAHFIKAFPGNETNLDWVVQEVAAGHAYSAILERHIPAIQEVQQKLIDLQTSVVLP
LKDLKEVNKRMTTGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRINRQILQET
GVEPDPATLAQKMDMPEDKVRKILKIAKEPISMETPIGDDDDSHLGDFIEDNNTVSPSDS
ALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRADKLKSFLESQ
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaacgactggtaaaacctcgacgacggtctctcggtctgctaagaaaaccttg
gccgcgacagcaaaatcaggggcatcaagctcggtagagctcgatgagcttcacgaaagt
ggagagccaggcgcagcgcctgccaaaaaggcagttaaaaaggcggctgctaaaaaaacg
gtagctaaaaaagcggctgccaagaaaacagcggctaaagccgctaccggcggtcgccgt
ggacgtcctgcaaaaaatgccaataacgacggtatcgattttgtcgatgacgacgaaatg
ggcgaagaagaggtcattcctgatctcaagccggtggccaagcgtggtgccaagcgcgcc
aaagccgaaaaagacgtttttggggtacgtggccaactgagccctgaagaacaggaagcc
cgtcgcaaccgcctcaaagccctgatcaagctgggtaaggatcgcggttacctgacctac
agtgaaatcaatgaccacctgcccgatgatctggtagatgtcgaagccattgatggcatt
atcggcaccttcagtgacatgggtatttcggtttacgaccaggctcccgacgctgacacc
ttgctcatgagcgataacgcgcccatggcatccagcgacgacgatgttgaggacgaagct
gaggccgctttgaccacggtggattccgacttcggtcgcacgactgaccctgtgcgtatg
tacatgcgcgaaatgggctcggtggaactgctgactcgcgaaggtgaaattgaaatcgcc
aagcgtatcgaagacggtctgaagcacatggtgatggcgattgccgcctgcccaaccacg
gttaacgaaattctggcctatgttcagcgtgtgcgcgaaggcgtcatgcagatcgacgaa
gtggttgatggcctggtggacgatgatggcgaggaatacgctggttccggcgtgagcgct
gacgatgaggacgaaggtccagccggcggcatgagcagcaagcagattgaatacctgcgc
aacaagtcgctcaagaaattcgacatcattggcgaatggtttgacaagatgcgcgtgtct
ttcgagaccgatggctacaagagccccggttacgtgcaggcacaggaaaccatcctgaac
gaattcatgggcattcgctttactgccaagatggtggaaaagttggccgataccatgcgt
gaacaggttgccatcgtgcgtcagcacgagcgcgaaatcctgaacatctgtgtggatcgt
gccgatatgccgcgtgcacactttatcaaggcgttccccggcaatgaaaccaatctggat
tgggtggtgcaggaagtggccgccggtcacgcttacagcgctattttggaacgccacatc
ccggcgattcaggaagttcagcaaaaactgatcgacctgcaaaccagcgttgttctgcct
ttgaaggacctcaaagaagtcaacaaacgcatgaccaccggtgaagccaaggctcgtaaa
gccaagcgcgaaatgaccgaggccaacttgcgtctggtgatctcgattgccaagaaatac
accaaccgtggtttgcagttcctggatctgattcaggagggcaatatcggtttgatgaaa
gccgtggacaagttcgaataccgtcgtggctacaaattctccacctatgcaacgtggtgg
attcgtcaggccattacgcgttcgatcgctgaccaggcccgcacgattcgtattccggtt
cacatgatcgaaacgatcaacaagatgaatcgtatcaatcgtcagatcttgcaggaaacc
ggcgttgaacccgatcccgcaaccctggcccagaagatggacatgcccgaggacaaggtt
cgcaagatcctgaaaatcgccaaagagcctatctccatggaaacgcctatcggtgacgat
gacgattcccacttgggcgatttcatcgaggacaacaacactgtttcgccatcggattcg
gctttgcacggttccatgcgcgatgtggtgaaagacgtcctggattccctgacgccacgc
gaagccaaagtgctgcgcatgcgtttcggtatcgagatgagcaccgaccagactctggaa
gaggtgggcaagcagtttgacgtcacgcgtgagcgtattcgtcaaatagaggccaaggct
ttgcgcaagctgcgtcatcctagccgtgctgacaagttgaagagcttcctggaaagccag
taa
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