Alcaligenes aquatilis: D3M96_15240
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Entry
D3M96_15240 CDS
T05678
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aaqu
Alcaligenes aquatilis
Pathway
aaqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3M96_15240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaqu03019
]
D3M96_15240
Enzymes [BR:
aaqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3M96_15240
Messenger RNA biogenesis [BR:
aaqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3M96_15240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
AAA_19
LBP_BPI_CETP_C
Motif
Other DBs
NCBI-ProteinID:
AYN21768
UniProt:
A0A3G2HYD6
LinkDB
All DBs
Position
complement(3323094..3324470)
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AA seq
458 aa
AA seq
DB search
MTDKTPSTPNDLTFADFGLHPGILNAVTEAGYSKPTPIQAEAIPVVLAGRDVMGAAQTGT
GKTAAFSLPILNRLMAHATTSASPARHPVRALVLTPTRELADQVAESIALYSKSVPLRST
VVFGGVDIGPQKEALRRGVEIVIATPGRLLDHIDQRTINLSQVSMLVLDEADRMLDMGFL
PDLDRIVSMLPKSRQGLLFSATFSKEIRKLARNFLNDPVEIEVAARNATASNVTQVVYPM
SADEKRRAVAHLIKTKKLTQTIVFSNTKIGAGQLARYLEREGIKAESIHGNKSQLERMKV
LDAFKSGTVDVLVATDVAARGLDVAGMPCVINVDLPYNAEDYVHRIGRTGRAGASGEAIA
LMAPDEEHLLQEIEKLIGTVVPRLKLDLPSAASSSRSGSNRHERGERRSYQPNTPPVDEF
FLKPYEPSTAAAPKPAVTTPSSTTRKRSVGVLLGGGRY
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaaactccttcgactcccaatgaccttacgtttgctgatttcggtctgcac
cctggaatattaaatgccgtcaccgaggcgggatattccaagcctacgcctattcaggcc
gaggcgattcccgtggtgctggctggccgtgatgtcatgggggcagcccagactggtaca
ggtaagacggcagccttttctttgcctatcctgaatcgtctgatggcacacgccacgacc
agcgcttctcccgctcgtcacccggtgcgggcgttggtgctgacgccaacacgcgagttg
gccgaccaggtggctgagagcattgcgctctacagcaaatcggtcccgctgcgctcgacg
gtggtatttggtggcgtggatatcggaccacaaaaagaagccctgcgacgcggcgtggag
attgtcatcgcgaccccgggccgtctgctcgatcatattgatcagcgcaccatcaattta
agccaggtcagcatgctggtgctggacgaagcagaccgcatgctggacatgggctttttg
cccgatctggaccgtattgtttccatgctgccgaaaagccgtcagggcttgttgttctcg
gcgacgttcagcaaggaaattcgtaagctggcccgtaacttcctgaatgatccggtcgag
attgaagtggccgcccgcaacgcgaccgcctcgaatgtgacccaggtggtataccccatg
tcggctgacgagaagcgtcgcgccgtggcgcatctgatcaagacaaagaagctgactcag
actatcgtcttttccaataccaaaattggtgccggtcaactggcacgctatctggagcgt
gaaggcatcaaggcggaatccatccacggcaataaaagccagctggagcgcatgaaagta
ttggacgccttcaagagcggtactgtggatgttctggtcgctaccgatgtggccgcccgt
ggtctggacgtggccggtatgccttgcgtgatcaacgtggacctgccgtacaacgctgaa
gactatgtgcaccgtattggtcgtaccggtcgtgccggtgcctcgggtgaagccattgcc
ttgatggctcccgatgaagaacacttgctgcaggaaattgaaaagctgattggtacggtg
gtgccacgcttgaagctggatctgccatccgcagcctcgtcttcccgttctggctccaac
cgccacgagcgtggtgagcgtcgttcgtatcagccgaacacaccacctgtggacgagttt
ttcctgaagccttacgagccatccaccgctgcggctcccaagccggcggtgacgactcct
tccagcaccacgcgcaagcgttcggtgggtgtcctgttaggcggcggccgctactaa
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