Alcaligenes aquatilis: D3M96_19590
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Entry
D3M96_19590 CDS
T05678
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aaqu
Alcaligenes aquatilis
Pathway
aaqu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaqu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D3M96_19590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaqu03021
]
D3M96_19590 (rpoC)
03400 DNA repair and recombination proteins [BR:
aaqu03400
]
D3M96_19590 (rpoC)
Enzymes [BR:
aaqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D3M96_19590 (rpoC)
Transcription machinery [BR:
aaqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D3M96_19590 (rpoC)
DNA repair and recombination proteins [BR:
aaqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D3M96_19590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
PaaX
Motif
Other DBs
NCBI-ProteinID:
AYN22566
UniProt:
A0A3G2HZH8
LinkDB
All DBs
Position
complement(4271570..4275835)
Genome browser
AA seq
1421 aa
AA seq
DB search
MKALLDLFKQVTQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVSKVRRERMGHIELACPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDREVERLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKADWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLELMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRELVNGKGEGLFMADVAEVQRAYDNK
EVELQTRLTVRIEEFEKGEDGEWVKTIKRYETTAGRALLSEILPKGMPFTALNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMNDMVVPAVKESILAQASKE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDRVGKAMMEQLASEPVTNRFGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTKGGYTMKAILDGGEVIEPLRDLIL
GRVASTDIVNPDNQELVIPAGTLLNEDLVELIDNLGIDEVKIRTPLTCETRHGLCVSCYG
RDLGRGTLVNRGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAALASSVETKTAGTVGF
EIGLRYVTNAKGERVAISRSGEIVIFDDNRRERERHKVPYGATITVGDGDAIKAGQRLAS
WDPLTRPIVSEYTGTVRFENIEEGVTVARQVDEVTGLSTLVVITPKTRGGKITMRPQIKL
LNEQGQEIKIAGTDHMVNISFPVGALITVRDGQQVSVGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGLLAEVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKEKQVLAHDG
QVVNKGEMIVDGPADPHDILRLKGIEKLANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTSFITGEQVERSELLNENDRVLAENGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGMAFHAARKEKEAFEVAERK
AARELENPFASAPEPSEDPVFVSGASESEQAQPEAPEGDQE
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctctttaaacaagtcactcaggacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaatccggtcctggtctttcggtgaagtccgcaag
ccagagaccatcaactatcgcacgttcaaacccgaacgcgatggtctgttttgcgccaag
atttttggtcccatcaaggactacgaatgcttgtgtggcaaatacaagcgcctgaaacat
cgtggcgtcatctgcgagaagtgtggtgttgaagtcaccgtctccaaggtgcgtcgcgag
cgcatgggtcacattgaactggcctgcccggttgctcacatctggttcctgaagagcctg
ccatcccgtctgggcatggtgctggacatgaccctgcgtgacatcgagcgcgtactgtac
tttgaagcctggtgcgtgatcgaacctggtatgaccccgctcaagcgcggtcagatcatg
tccgatgacgatttcctggccaagaccgaagaatacggtgatgacttccacgccctgatg
ggcgcggaagcggtgcgcgaattgttgcgtacgatcgacatcgatcgcgaagtcgagcgc
ctgcgcgccgaactgaaagccactggctcggatgccaagatcaagaagatctccaagcgt
ctgaaagtactggaaggcttccagaaatccggcatcaaggcagactggatgatcatggaa
gtgctgcccgtgctgccaccggacttgcgtccgctggtgccactggacggtggtcgcttt
gcgacttccgacctgaacgatctgtaccgccgcgtgatcaaccgtaataaccgtttgaag
cgtctgctggaactgaaggctccggacatcatcttgcgcaacgaaaaacgtatgctgcaa
gagtccgtggactccttgctggataacggtcgtcgcggtaaagccatgaccggcgccaac
aagcgtcaactgaagtccttggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactctggtcgttccgtgattgtggtgggtcctcag
ttgaagctgcaccagtgtggtctgcccaagctgatggcgctggaactgttcaagcccttc
atcttcaaccgtctggaattgatgggtctggctacgaccatcaaggcggccaagaagttg
gtggaaagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctgaaccgtgcaccgacgctgcaccgtttgggtattcaggcttttgaaccggtc
ctgatcgaaggtaaagcgattcagctgcaccccttggtgtgtgccgcctttaacgctgac
tttgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcccagctggaagcg
cgcaccctgatgctggcctcgaacaacgtgctgttccccgccaacggcgaaccatccatc
gttccttcccaggatatcgtgttgggtctgtactatgcgacccgcgaactggtaaatggc
aagggcgaaggtctgttcatggccgatgtggccgaagtccagcgcgcctacgacaacaag
gaagtcgagctgcaaactcgtctgaccgtccgtatcgaagaattcgagaagggcgaagac
ggtgagtgggtcaagaccatcaagcgttacgaaacgacggctggccgtgccttgttgtcc
gaaattctgcccaagggcatgcctttcaccgcactgaaccgtgcgttgaaaaagaaagaa
atttcgcgtctgatcaaccagtccttccgtcgctgtggcctgcgtgccaccgtgattttt
gcggacaaattgatgcagtccggtttccgtctggcaacacgtggtggtatttccatcgcc
atgaacgacatggttgtgcctgccgtcaaggaaagcatcctggcccaggcaagcaaggaa
gttaaagaaatcgacaagcagtactcctccggtctggtgacggctcaggaacgctacaac
aacgtggtggacatctggggcaaagccggtgaccgcgtgggtaaggccatgatggagcaa
ctggcttccgagccagtgaccaaccgttttggtgaagaagtacgccaagagtccttcaac
tccatctacatgatggcggactccggtgctcgtggttcggctgcacagattcgtcagctg
gctggtatgcgtggtctgatggccaagccagatggctccattattgaaacgcctattacc
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttcgactcacggggctcgt
aagggtctggctgatacggccttgaagacggctaactccggttacctgactcgtcgtctg
gtcgacgtgactcaagatctggtcattaccgaagacgattgcggtaccaagggcggctac
accatgaaagccatcctggatggtggtgaggttatcgagcccctgcgcgatctgattctg
ggtcgtgtggcctcgaccgacatcgtcaaccctgacaaccaggaactggttatccccgcc
ggcaccttgctgaacgaggatctggtcgagttgatcgacaacctgggcattgatgaagtc
aagatccgtactccgctgacttgcgaaacccgtcatggcttgtgcgtaagctgctacggt
cgtgatctgggccgcggtacgctggtcaatcgtggtgaagctatcggtgttatcgcggct
cagtccatcggtgaaccgggtacccagttgaccatgcgtacgttccacattggtggtgcc
gcttcgcgtgccgcgctggcaagttcggttgaaaccaagacggcaggtacggtcggtttt
gaaatcggtctgcgttatgtgaccaacgccaagggcgaacgtgttgcgatctcccgttcc
ggcgaaattgtcatttttgacgacaatcgtcgcgagcgcgaacgtcacaaagtgccttac
ggtgccaccattacggtcggtgatggtgatgcgatcaaggctggccagcgtctggcaagc
tgggatccgctgacccgtcctatcgtgtccgagtacaccggtacggttcgcttcgagaat
atcgaagagggcgtaaccgtggctcgtcaggtggacgaagtgaccggcctgtcgactctg
gttgtgatcactcccaagacacgtggtggcaagatcaccatgcgtcctcagatcaagctg
ctgaacgaacagggtcaggagatcaagatcgcgggtaccgatcacatggtcaatatctcc
ttcccagtgggcgccctgattaccgttcgtgacggtcagcaagtgtccgtgggtgagatt
ctggcgcgtattcctcaggaatcgcaaaagactcgggatattactggtggtctgccacgt
gtggccgaactgttcgaagctcgttcgcccaaggatgccggtctgctggccgaagtcacg
ggtacagtttccttcggtaaagacaccaagggcaaacagcgtctggtcattactgacctg
gacggtgtcagtcacgaattcctgattccgaaggaaaaacaggttctggctcacgacggt
caagtggtgaacaagggcgagatgattgtggacggcccggccgatccgcacgacatcctg
cgcttgaagggtatcgagaaactggccaactacattgttaatgaagtgcaggacgtttac
cgtctgcaaggtgtgaagatcaacgacaagcacattgaagtgattgttcgtcagatgctg
cgccgcgtgaacattgtggatgccggtgataccagcttcatcacgggtgaacaggttgaa
cgctccgaactgctgaacgagaacgatcgcgtcctggctgaaaacggtattcctgctacg
tacgaaaacgtgctgctgggtattaccaaggcctcgctgtcgaccgactccttcatctcg
gcggcttccttccaggaaaccacccgcgtgttgaccgaagcggccatcatgggcaaaacc
gacgatctgcgtggtctgaaagaaaacgtgatcgtgggccgtctgattcctgctggtacc
ggtatggctttccatgctgcccgcaaggaaaaagaagcctttgaagtggcagagcgcaaa
gcagcccgtgaactggaaaatccgttcgcatcggctcctgagccttcggaagaccccgtc
tttgtgtcgggtgcctctgagtctgagcaggcgcaacctgaagccccagagggcgatcag
gaataa
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