Actomonas aquatica: K1X11_004900
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Entry
K1X11_004900 CDS
T09911
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aaqw
Actomonas aquatica
Brite
KEGG Orthology (KO) [BR:
aaqw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaqw03019
]
K1X11_004900 (hrpA)
Enzymes [BR:
aaqw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K1X11_004900 (hrpA)
Messenger RNA biogenesis [BR:
aaqw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K1X11_004900 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
SRP54
nSTAND3
AAA_22
AAA_30
CON_HrpB
TsaE
AAA_25
ResIII
NACHT
PhoH
AAA_23
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
WRQ88732
LinkDB
All DBs
Position
complement(1293061..1297083)
Genome browser
AA seq
1340 aa
AA seq
DB search
MEFPPELPISARAGEIMEALRDNQVVILAGETGSGKTTQIPKLCLAAGGGEKGRIACTQP
RRVAALSVSRRVAEEMGVTWGREVGCKVRFADQTSRDTRVKFMTDGMLLAEVQGDPQLRE
YDTIIIDEAHERSLNIDFLLGHLRQLRHRRPELRIVVTSATIDTAAFSKAFDDAPVIEVS
GRTFPVEVVYAPLDEFGSDEAEGDEPTSRNESLHYIDGAVEAAQRILDSTAGGDVLVFMP
AERDIREAIDLLQGSRSARGCDLIPLFGRLSNAEQQRVFAATARRRVIVATNIAETSLTL
PGIRYVIDTGLARISRYAPQARTRRLPIEPVARSSADQRKGRAGRVAEGVCVRLYSEKDY
EERPRFAQPEIQRANLADVILRMKAFGLGDIERFPFINMPATKAVRAGYALLEELHAYAE
PETVGERRLSDIGRELARLPVDPAVGRMILQARSEKALREVLVIAAGLSVQDPRERPLDK
QQAADQAHRRFTHPESDFLTLLAIWEALHDEFERLSQSKMRRWCHTHFLSYTRMREWRDI
HSQLVDTLRERRDFRMSSVNDGIKEPVDIGDLRCEHPAYRAIHRSILSGLLGNIAARDEE
KGGYKATHDRKVAIFPGSGLFVKEERKRGKNGALKPVLGGGGPRGPRWIMSAEMMETSRL
YARTCARLDPRWALELGAHLLKVEHSEPFWDEEKGRVMVRQRTRLYGLEIESRAVGYGKV
NPEHATELFIREALVNDTIKWPFDFLSHNRKVRADVELQLTRARHGAAMNLDEAVYRFYE
DALLEREFYVSAVGELIALVREQKGREPHFLELNAADLQPPREAQVDEQAYPESLPLGTT
VLPLNYVYKPGQDDDGVTLDVDVLTATTLTPAELDWAVPGHLAGKVEHYLKGLPKELRRA
VTPLAATAASMVAQLQSRDRLTGRRETVAEAVAALLGERFQLRVSPSVWDERPLPNHLRV
RVRVLDENDREIAASRELAEIQAALTAREAEASRAVVKEAPSVWKKARRDWEDGPLETWP
ERAIPDEVQIGEQAGVAIKAYPVFQDTAEGIMLRLSRAEDDAARRRPAGLRAMLAQGLRY
EIAWLEKDLKALKAVGPLAATFVPLAELQVDALANLTTWATDPARLPTVDGRRTRVQFER
VVADTKVALRRRVPQFLDEVKAVLELRQQTQVHATPYPGMQAEVAALVGRHFLRDVPQAQ
LQHLPRYLQARLLRAERWQQNRAKDEQRAAELTQLAKAAEAVVGKPGAAELRWLLEELRV
SVFAQHLGTAEPVSVKKVERAIAAVRAGAGLAEASVAPEVGGATKPKPKPLAITPLPGKT
KQKPIKSLNALGGLFGGGSR
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
ttggaattcccgcccgagctgccgatcagcgcgcgcgctggggagatcatggaggccttg
cgggataatcaggtggtgattttggcgggtgaaaccggctccggcaaaaccacgcagatc
ccgaaactctgtctcgcggccggcggcggcgagaaggggcgcatcgcctgcacccaaccg
cgacgcgtggcggcgctgtcggtgtcgcgtcgggtggccgaggaaatgggcgttacgtgg
ggacgtgaagtaggctgcaaggtgcggtttgccgatcagacctcccgcgacacgcgggtg
aagtttatgaccgacggcatgctgctggccgaggtccagggcgacccgcagctacgcgaa
tacgatacgatcatcatcgacgaggcgcacgagcgctcgctcaacatcgacttcctgctc
ggccatctgcgccaactgcgccatcggcgcccggagctgcgcatcgtggtgacttcggcc
acgatcgacacggcggcgttcagcaaggcgtttgacgacgcaccggtgatcgaggtctcg
gggcgcacctttccggtggaggtggtgtatgcgccgctggacgagtttggcagcgacgag
gccgaaggggacgaacccacctcgcgcaacgagtcgctgcactacatcgacggcgcggtg
gaggcggcgcaacgcatcctcgattcgacggcgggcggcgacgtgttggtcttcatgccg
gccgagcgcgatattcgcgaggcgatcgatttgctgcagggatcgcggtcggcgcggggc
tgcgatttgattccgctcttcggccgcctctccaatgccgagcagcaacgcgtgtttgcg
gcgacggcccggcgccgcgtcatcgtggcgaccaacattgcggagacgtcgcttacgttg
ccgggcatccgctacgtgatcgacacgggcttggcgcgcatcagtcgttatgcgccgcag
gcccgcacgcggcgactgccgatcgagccggtggcgcgctccagtgccgatcaacgcaag
ggccgcgcgggtcgcgtggccgagggcgtgtgcgtgcggttgtattcggagaaggactac
gaggagcgaccgcgctttgcgcagccggaaattcagcgcgccaatttggccgacgtgatc
ctgcgcatgaaggcctttgggctgggcgacattgagcgttttcccttcatcaacatgccg
gcgaccaaggcagtgcgagctggctacgccctgttggaggaactgcacgcctacgccgaa
ccggagacggtgggggagcgccgcctgagtgacatcggtcgggagttggcgcgtctgccg
gtggacccagcggtgggccgcatgattctgcaggcgcgcagcgaaaaggcgttgcgcgaa
gtgttggtgatcgcggcgggattgagcgtgcaggatccgcgggagcgaccgctcgacaag
cagcaggcagcggatcaggcgcatcggcgtttcacgcacccggagtcggattttcttacc
ctgctcgcgatctgggaagcgttgcacgatgagtttgaacggctgtcgcagtcgaagatg
cggcgctggtgccacacccactttttgagctacacgcgcatgcgggaatggcgcgacatc
catagccaattggtggatacgctgcgggagcggcgggacttccgcatgagttcggtgaac
gacggcattaaagagccggtcgacatcggcgacttgcgctgtgagcacccggcctaccgc
gcgattcaccgcagcatcctgtcgggcttgctcggcaacatcgcggcgcgcgacgaagag
aagggtggctacaaagcgacgcacgatcgcaaggtggcgatttttcccggctcgggcctc
ttcgtgaaagaagagcgcaagcgcggcaaaaacggcgcgctgaaaccggtgctgggcggc
ggcggaccgcgagggccgcgctggatcatgtcggccgagatgatggaaacctcgcgcctc
tacgcccgcacctgcgctcggctggatccgcgctgggccttggagctcggcgcccatttg
ctgaaggtcgagcacagcgaaccattctgggatgaggagaaggggcgggtgatggtgcgg
cagcgcacgcggctctacggcctggaaatcgaaagccgagcggtgggctatgggaaggtg
aacccggagcacgcgaccgagttgttcatccgcgaagcgttggtgaatgacaccatcaag
tggcccttcgattttctgtcgcacaaccgcaaggtgcgcgccgacgtggagctgcagtta
acgcgggcccggcacggcgcggcgatgaacctcgatgaggcggtgtatcgattttatgag
gacgcgctgctggaacgggagttttatgtttcggcggtcggtgaactgatcgcattggtg
cgcgagcagaaggggcgggagccgcactttctggagttgaatgcggccgacctgcagccg
ccgcgcgaagcgcaggtggatgaacaggcctacccggagagcctgccgctgggcacgacg
gtgctgccgctcaactacgtttacaaaccgggccaagacgacgacggcgtgactttggat
gtcgatgtgctcacggccacgacgctgaccccggcggagctcgactgggcggtgccggga
cacctcgccggcaaggtggagcattacctgaagggcttgccgaaggagttgcgccgggcg
gtgacgccgctggcggcgacggcggcgtcgatggtggcgcaattgcaatcccgcgaccgc
ttgaccgggcgacgcgaaacggtggccgaggcggtggcggcgctgctgggcgaacgtttt
caactgcgggtgagtccgtcggtctgggacgaacgcccgctgccgaaccacctgcgcgtg
cgggtgcgggtgctcgacgaaaacgaccgcgagatcgcggcctcgcgcgagttggcggag
atccaggccgcgttgaccgcgcgcgaagcggaggcgagccgggcggtcgtcaaagaggct
ccgagtgtctggaagaaggcgcggcgcgattgggaggatggtccgctcgaaacgtggccc
gagcgcgcgattcccgacgaggtgcagatcggcgaacaggcgggcgtggcgatcaaggcg
tatccggttttccaagacacggcggaaggcatcatgctgcggctaagccgggcggaggac
gacgcggcgcggcggcgaccggcgggtctgcgggcgatgctggcgcaagggctgcgttac
gagatcgcatggttggaaaaggatctgaaggcgctgaaggcggtcgggcccttggcggcg
acgtttgtgccgctggcggagttgcaagtcgacgcgctggccaacctcaccacgtgggcg
acggatccggcgcgtttgccgacggtggacgggcggcgcacgcgggtgcagtttgagcgg
gtggtggcggacaccaaggtggcgctgcgacgacgcgtgccgcagtttctggatgaggtg
aaagcggtgctggagttgcggcagcagacgcaggtgcacgcgacgccgtatccggggatg
caggccgaggttgcggcgctggtcggccgccattttctgcgggatgtgccgcaggcgcag
ctgcagcacctgccgcgttacctgcaggcgcggttactgcgggcggagcgttggcaacag
aatcgcgccaaagacgagcagcgggcggcggagctgacccagctggccaaagcagctgag
gcggtggtgggcaaaccgggggcggcggagctgcgttggttgctggaggagttgcgggtg
agtgtattcgcgcaacatctcggcacggcggaaccggtgtcggtgaagaaggtcgagcgg
gcgatcgcggcggtgcgcgccggagccggattggcggaagcgagcgtggcgccggaggtt
gggggggcgacgaagccgaagcccaagccactggcgattacgccgctgcccggtaaaacc
aaacaaaagccgatcaagagcctgaatgcgctgggtggcctcttcggtggcggatcccgg
tga
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