KEGG   Actomonas aquatica: K1X11_009685
Entry
K1X11_009685      CDS       T09911                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
aaqw  Actomonas aquatica
Pathway
aaqw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aaqw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    K1X11_009685 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aaqw03021]
    K1X11_009685 (rpoB)
   03400 DNA repair and recombination proteins [BR:aaqw03400]
    K1X11_009685 (rpoB)
Enzymes [BR:aaqw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     K1X11_009685 (rpoB)
Transcription machinery [BR:aaqw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     K1X11_009685 (rpoB)
DNA repair and recombination proteins [BR:aaqw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      K1X11_009685 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: WRQ89679
UniProt: A0ABZ1CGH9
LinkDB
Position
complement(2454212..2458057)
AA seq 1281 aa
MAVRKNQADRINFGKLREVLQPPNLIELQISSYLEFLQKGTPDKQRLNQGLEAVFREVFP
IESYDGRLTLEYVSYTIGDAKNSEIECLREGITYSVPLYVKLRLREEDFIKDEEIYMGEI
PMVTERGSFIINGAERVVVSQLHRSPGIAFEVTPHANGKPLHSFRIIPDRGTWLEVQFDN
NDLLYVYLDRRRRRRKFLITTLLRAVGYSSDVDILNLFYEIQELTVNQALEMENVSNLVL
VEDAIDAQQGVVLARAFEPLTKQIVRTFEKHDIAAIRVIDTSADEGAIIRALKKDPTRNE
EEALKEIYKRLRPGEPPTTANAKALLKRLFFDPKRYDLGRVGRYKVNQKLGLEVDLEQRT
LESGDVTAATKYLVRLKKGEGVVDDIDHLGSRRVRTVGELLANQCRVGLARTERLVRERM
TMYDQSVDSITPQKLINPKALTTVIRDFFARSQLSQFMDQINPLAEVTHKRRLSALGPGG
LNRERAGFEVRDVHPSHYGRICPIETPEGPNIGLINSLSTYARVNEFGFIETPYRLVKDG
SVTDQIDYLTADQEEGKIIAQANAEIDDKNHFIGKVTVRQDGEFLELDPEEVHYMDVSPK
QVISIAAGMIPFLEHDDANRALMGANMQRQGVPLLQAESPYVGTGIEERVARDSKIVAVA
EEEGVIASVDAKRVVVSRDGELPRNFDKNPKSDSKNGVHVYELRKFMRSNAGTCFNQKPV
VDKGQKVKVGDIIADGPSTQKGEMALGRNVLVAFMPWNGYNFEDAILISEKVLKEDIFTS
IHIQEFEVTARDTKLGPEEITRDIPNVGEEALKNLDHNGVIRVGAEVKPGDILVGKITPK
SETELAPEEKLLRAIFGEKAADVKDTSLVVPSGATGIVMDVKVSSRVDFEKEKLSPSDRR
RQIKQIQESYKTEMDKLREALTESLSNILLGEKIPLDVINGDTGEIIIPANRKITKTLLR
KLAAVSKHVEIDPSPVRIKIMEIIGSFQSKFDELDADRERKVEGVESGEDAGNGAIKQVK
VYVATKQKLKVGDKMAGRHGNKGVVAKIVPEEDMPYLPDGTPIQICLNPLGVPSRMNVGQ
VLETHLGWACSKLGIKVATPVFDGIPEKQVRNYLKDAGLPNSGKSTLYDGRTGEKIDQQV
VVGYIYMMKLNHLVSHKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWALEAYGAAH
TLQELLTVKSDDVQGRTKIYESLVKGDNTLQAGTPESFNVLIKEIQSLGLDIKLNKKDAL
GNLTPVQPPSAASIQTRASNF
NT seq 3846 nt   +upstreamnt  +downstreamnt
atggccgtccgcaaaaatcaagccgatcgcatcaacttcggtaagctccgcgaagtgctt
cagccgccgaatctgatcgaactccagatcagttcgtatcttgaattcctgcaaaagggc
accccggacaagcagcgcctgaaccaaggcctggaagcggtgttccgcgaggttttcccg
attgagtcgtatgacggtcgtctgaccctcgaatacgtttcctacacgatcggcgacgcc
aaaaattccgagatcgagtgcctccgtgaaggtatcacctattcggtgccgctctacgtg
aagctccgtctgcgcgaagaggacttcatcaaagacgaagaaatttacatgggtgaaatc
ccgatggtgaccgagcgcggctcgttcatcatcaacggtgccgagcgcgtcgtcgtctcc
cagctgcaccgttcgccgggtatcgccttcgaggtgacgccgcacgccaacggcaagccg
ttgcactccttccgcatcattcccgaccgcggcacttggttggaagtccagttcgataac
aacgacctcctctacgtttacctcgaccgtcgccgtcgtcggcgcaagtttctcatcacc
acgctgctgcgggcggtgggatactccagcgacgtggatatcctgaacctgttctacgag
atccaggaactcacggtgaaccaggccctcgagatggaaaatgtttccaatctcgtgctg
gtggaagatgccatcgacgcccagcagggtgtggtgctcgcccgtgcctttgagccgctg
accaagcagattgtccgcacgttcgagaagcacgatatcgcggccatccgtgtcatcgat
acttcggccgacgagggtgccatcattcgcgctctcaagaaggatccgactcgcaacgag
gaggaagccctcaaggaaatttacaagcgcctgcgtccgggcgaaccgccgacgaccgcc
aacgccaaagccctgctcaagcgtctcttctttgatccgaagcgctacgacctcggtcgc
gtgggtcgttacaaggtcaaccaaaagctcggtctcgaagttgatctcgagcaacgcacg
ttggagtcaggcgacgttaccgccgccaccaagtatctcgtgcgtctcaagaagggtgag
ggcgtcgtcgatgatatcgaccacctcggttcccgtcgtgtccgcaccgtgggtgagttg
ctcgccaaccagtgccgcgtgggtctggcccgcaccgaacgtctggtgcgcgagcgcatg
accatgtatgatcagagcgtcgattcgatcacgccgcagaagctgatcaacccgaaggcg
ctcaccacggttattcgtgacttctttgcccgttcgcagctgtcccagttcatggaccag
atcaacccgctcgccgaggtcacgcacaagcgtcgtctctccgcgctaggcccgggtggt
cttaaccgtgaacgtgccggctttgaagtgcgcgacgtgcatccttcgcactacggtcgt
atctgcccgattgagaccccggaaggtccgaacatcggtctcatcaattccctgtccacc
tacgctcgcgtcaacgagttcggctttatcgaaacgccgtatcgtttggtgaaagatggc
agtgtcaccgatcaaatcgactacctcactgccgaccaggaagagggaaagatcattgcc
caggccaacgctgagatcgacgacaagaatcacttcatcggcaaggtcaccgttcgtcag
gacggggagttcctcgaactcgacccggaagaggtccactacatggacgtttcgccgaag
caggtcatttcgatcgcggccgggatgattccgttcctcgagcatgacgatgctaaccgt
gcgctcatgggcgccaacatgcagcgccaaggtgtgccgctcctccaggccgagtcccca
tatgtgggcaccggtatcgaagagcgcgtcgcccgcgactccaagatcgttgcagtggcc
gaagaggagggcgtcatcgcctccgtcgacgccaagcgcgtagtggtcagccgcgacggc
gaactcccgcgcaacttcgataagaacccgaagagcgattcgaagaatggcgtacacgtt
tacgagctgcgcaagttcatgcgttccaacgccggcacctgcttcaaccagaagccggtc
gtcgacaagggtcagaaggtgaaggtcggtgacattatcgccgacggcccctccacccaa
aagggcgagatggctctcggtcgcaacgtgctcgtcgcgttcatgccgtggaatggttac
aacttcgaggacgccatcctcatttccgagaaggtgctcaaggaagacatcttcacctcc
atccacattcaggaattcgaggtcaccgcgcgtgacaccaagctcggtccggaagaaatc
acccgtgacatcccgaacgtaggtgaggaagccctcaagaacctcgatcacaatggcgtc
attcgcgtcggtgccgaggtgaagccgggcgatatcctcgtcggtaagatcacgccgaag
tccgaaaccgaactcgcgccggaagagaaactcctccgcgccatcttcggtgaaaaggcc
gccgacgtgaaggacacctcactcgtcgttccctccggcgccaccggtatcgtgatggat
gtcaaggtctccagtcgcgtcgacttcgagaaggagaagctctcgccctccgatcgtcgc
cgccagatcaagcagatccaggagtcctacaagaccgagatggacaagctccgcgaggcg
ctgaccgagtccctctccaacatcctcctcggtgagaagatcccgctcgacgtcatcaac
ggcgacacgggtgagatcatcatcccggccaaccgcaagatcaccaagaccctcctgcgc
aagctcgccgcggtctccaagcacgttgagatcgatccgtctccggttcgcatcaagatc
atggagatcatcggttccttccagtcgaagttcgatgagctcgacgcggatcgtgagcgc
aaggttgagggcgtggagtccggcgaagatgccggcaacggtgccatcaagcaggtcaag
gtctacgtcgccaccaagcagaagctgaaggtcggtgacaagatggccggtcgtcacggt
aacaagggtgtggtcgccaagatcgtgcccgaggaagacatgccttacctcccggacggc
accccgattcagatctgcctcaacccgctgggcgtgccgtcgcgcatgaacgtggggcag
gttttggagacccacctcggttgggcctgctccaagctcggcatcaaggtcgccaccccg
gtcttcgacggtattcccgagaagcaggtgcgtaactacctcaaagatgccggtttgccg
aactccggcaagtcgaccctctacgacggtcgcaccggtgagaagatcgatcagcaggtc
gtggtcggctacatctacatgatgaagctgaatcacttggtctcgcacaagattcacgct
cgtgcggtcggtccttactccctcgtcacgcagcagcccttgggcggcaaggcccaatac
ggtggccagcgcttcggcgaaatggaggtgtgggcgctggaagcctatggcgccgcgcac
acgctgcaggaactcctcaccgtcaaatctgacgacgtgcagggccgcaccaagatctac
gagtcgctcgtcaagggcgacaacacgctgcaggccggcacgccggaatccttcaacgtt
ttgatcaaggaaatccagtccctcggtctggacatcaaactcaacaagaaggatgcgctc
ggcaatctcacgccggtgcaaccgccctccgccgcgtcgattcaaactcgcgccagcaac
ttctaa

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