Actomonas aquatica: K1X11_021550
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Entry
K1X11_021550 CDS
T09911
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aaqw
Actomonas aquatica
Pathway
aaqw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aaqw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K1X11_021550 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaqw03021
]
K1X11_021550 (rpoD)
Transcription machinery [BR:
aaqw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K1X11_021550 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
CTD11
Motif
Other DBs
NCBI-ProteinID:
WRQ87407
LinkDB
All DBs
Position
complement(5638143..5639939)
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AA seq
598 aa
AA seq
DB search
MPRKAKSASSSAQSEAVEKAIDATKGNSSAAVDAASSGVNERIRLLIRLSKEQGYLTWDD
INEALPESVENQDEFDNIISILQNLEIEILEPDQVEDYKQRMEEAEEEATRTSQNDILDD
PVRMYLKQMGQVPLLTREQEVEISKRIETAELNAQSALFQAAIVGGYIGDLGEKLLTREE
RFDRIVIDKKIESRDAYFKALPKLVETTQRSETMVGQSWEELQGAKNEADRKKIGTKHKK
RETTLRNNFPKFFFKLKVYEEWLENKRPVISEIEQLLNKLERAKKPKTKRDAAIDPKKVK
ERLAELENELRLEPERFLEIVEQTFVHVREAHQAKTEMVEANLRLVISIAKKYTNRGLSF
LDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLN
KVMQVQKQLLQEYGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGD
FIEDKSAENPYDMTAYSLLREKIIDVLDSLTERERRVLSLRFGLVDGYSRTLEEVGKQFK
VTRERIRQIEAKALRKMRHPTRIRQLHGFFDAEQLDNAQNLMKLAVKPGTVQNLGRPN
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaagcaaagtcagcctcctcctccgcccaatccgaagccgtcgaaaaggcc
atcgacgcaacgaagggcaactcgtctgctgccgtcgacgccgcctccagcggggtcaac
gagcgcatccgcctgctcatccgcctttccaaggagcagggttacctcacttgggacgac
atcaacgaggcgctgcccgagtccgtcgagaaccaagacgaatttgataacattatttcc
attctccaaaacttggagatcgagatcctcgagccggatcaggttgaggactacaagcag
cgcatggaggaggccgaggaggaagccacccgcacctcccaaaacgacatcctcgatgac
ccggtgcgtatgtatctcaagcagatgggccaggtcccgctgctgacccgcgagcaggaa
gtcgagatttccaagcgcattgaaaccgccgaactcaacgcccagagcgccctcttccag
gccgcgatcgtgggcggttacatcggcgacctcggcgaaaagctcctcacccgcgaggaa
cgcttcgatcgcatcgtcatcgacaaaaagatcgagagccgcgacgcctatttcaaggcc
ctgcccaagctggttgagacgacccagcgcagcgaaaccatggtcggccagtcctgggaa
gaactccagggcgccaagaacgaagccgatcgcaagaagatcggcaccaagcacaagaag
cgcgagaccaccctgcggaacaacttcccgaaattcttcttcaagctgaaggtttacgag
gagtggctggagaataagcgccccgtgatctcggagatcgagcagctgctcaacaaactc
gagcgcgccaaaaagccgaaaaccaagcgcgacgccgccatcgacccgaagaaggttaaa
gagcgcctcgcggaactcgaaaacgagctgcgcctcgagccggaacgtttcctcgagatt
gtcgaacagaccttcgtccacgtccgtgaggcccatcaggccaagaccgagatggtggaa
gccaatctgcgtttggtgatctccatcgccaagaaatacaccaaccgcggcctctccttc
ctcgacctcattcaggagggcaacatgggcctcatgaaggccgtggaaaaattcgagtat
cgccgcggctacaagttctcgacctacgccacgtggtggattcgtcaggccatcacccgc
tccatcgccgatcaggcccgcaccatccgcattccggtgcacatgatcgagaccctcaac
aaggtcatgcaggtgcagaagcaactcctccaggaatacggtcatgagcccactccggaa
gaggtcgccgacgagatgaacctcccggtcgagcgcgtgcagcagatcatgaagatggcc
cagcagcccatctccctgcagtcccccgtcggtgacggcgacgacacctccttcggtgac
ttcatcgaggataagtccgcagagaatccctacgacatgaccgcctactcgctgctgcgc
gaaaagatcatcgacgtgctcgactccctcacggagcgcgagcgccgcgtgctttcgctc
cgcttcggcctcgtcgacggctacagccgcaccctcgaggaagtcggcaaacagtttaag
gtcacccgcgaacgtatccgccagatcgaagccaaggccctgcgcaagatgcgtcacccg
acccgcatccgtcagctccacggtttcttcgatgccgagcagctcgacaacgcgcagaac
ctcatgaagttggccgtcaagccgggcaccgtgcaaaacctcggtcgcccgaactga
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