Acetohalobium arabaticum: Acear_2000
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Entry
Acear_2000 CDS
T01290
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aar
Acetohalobium arabaticum
Pathway
aar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acear_2000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aar03019
]
Acear_2000
03009 Ribosome biogenesis [BR:
aar03009
]
Acear_2000
Enzymes [BR:
aar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acear_2000
Messenger RNA biogenesis [BR:
aar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acear_2000
Ribosome biogenesis [BR:
aar03009
]
Prokaryotic type
rRNA helicases
Acear_2000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Hyccin
HTH_10
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADL13497
UniProt:
D9QSN4
LinkDB
All DBs
Position
complement(2102949..2104532)
Genome browser
AA seq
527 aa
AA seq
DB search
MKKKQFEELNLSNEITKAVEDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGI
PILEKIDPDDKSVQALVLCPTRELAIQVSEEIGRLAKYKRKIKTLPVYGGQSIKRQIKAL
KKGVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVKGKRQ
TIFFSATMPQSILKLRKKYQTDPEIVKVVHKKLTVPNIEQGYFEVNRRNKLEVLSRLIDI
YNPKLSIVFCNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIETLVAT
DVAARGIDVDDVEAVFNYDIPQDIEYYVHRIGRTGRVGRQGYAFTFVVGKEIYQLKKIEK
YAKTKIERKQVPSVSDVEESKMELLLDRVSEILENENLAQETKLIEELVEEDYVSIDIAA
ALLKLVMDREEQEGAEKVESFGDTGAEPGMVRLFINIGSKQNVSPGDVVGAIAGETSIPG
NVVGLIDIYDKFTFVEVPREYAKEVLKIMKNNQIKGKSIDIELANPK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaagcaatttgaagaattgaatttatctaacgaaataactaaagcagttgag
gatatggggtttgaggaagctacaccgattcagacagaagcaattcctcacctgctggca
ggaaaagatgtaataggacaggcgcagactggtactggaaagacagctgcctttggaatt
ccgattctagagaagatagatcctgatgataaaagcgtacaggctttggtcctctgtccc
actagagaattagctattcaggtgtctgaggaaataggacgtctggctaagtataaaagg
aagattaagactttaccagtctatggcggacagtcgattaagcgccagattaaggcttta
aagaagggggtgcagattgtaataggtactccaggtcgtaccatggatcatatgagacgg
ggtactttaaagtttgataatttaaagatggttattttagatgaagccgatgaaatgttg
aatatgggctttagggatgatatagagacgattttggaaggagttaaagggaagagacaa
acaatcttcttttctgctactatgccgcagtctatcttaaaattaagaaagaagtatcag
actgatcccgagatagttaaggtggttcataagaagttaacagtaccgaatattgaacag
ggttattttgaagtgaatagaagaaataaattagaggttctatcgcgactgattgatatc
tataatccgaagttatcgattgtcttctgtaataccagaaagcaggtagatgaactgact
attcaactccaggcgcgtggttactttgtagatggtattcacggcgggttgaatcagcca
cagcgcgatagagtgatgaataagtttaagaatggcactattgagactttagtagctact
gatgtagcagctagaggaattgatgttgatgatgtggaagctgtattcaattatgatatt
ccacaggatatagagtactatgtacatagaatcggtagaacaggccgggttggcagacag
ggttatgcctttacctttgtagtaggtaaagaaatctatcaattaaagaagatagagaag
tatgctaagactaagattgaacggaagcaggtgccttcagttagtgatgtagaggagagt
aagatggagctattgttggatagagtatcggagattctagaaaacgagaatctagcccag
gagactaagctgattgaagaattagttgaggaggattatgtttctatagatattgcagca
gcactattgaagttagtcatggacagagaggaacaagaaggtgcagaaaaagtagaaagc
tttggagatacaggtgcagaaccgggtatggttagactatttatcaatataggcagcaag
cagaatgtaagtcctggagatgttgtgggagcaattgctggagaaaccagtattccaggt
aatgtagtaggattaattgatatttatgataaatttacttttgtcgaggttccaagagag
tatgccaaagaagtactcaagattatgaagaataatcagattaagggtaagagtattgat
attgaattagctaatcctaagtaa
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