Anopheles arabiensis: 120896369
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Entry
120896369 CDS
T07381
Name
(RefSeq) uncharacterized protein LOC120896369
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aara
Anopheles arabiensis
Pathway
aara03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aara00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120896369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aara03021
]
120896369
03019 Messenger RNA biogenesis [BR:
aara03019
]
120896369
Transcription machinery [BR:
aara03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120896369
Messenger RNA biogenesis [BR:
aara03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120896369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
Pcf11_helical
Pfc11_Clp1_ID
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
120896369
NCBI-ProteinID:
XP_040156356
LinkDB
All DBs
Position
2:2152519..2164715
Genome browser
AA seq
2097 aa
AA seq
DB search
MDQAAANAEGRAKQIEKEYLSSLADLNVNSKPLINMLTILAEENLEYAQIIVHAVEKHLA
KVAPDVKLPILYLVDSIVKNVGKQYQTLFSQVIVNMFCGVFQTVNEKIREKMFSLRQTWN
DVFQQSKLYTLDVKINSIDPGWPITAQLKSKTPTAIHVNPMFLKANGPEPTIAMQQQLRD
KQRELLELQARKLELELLTTKKRIMEQEKQLSIQTESVAKEPSLELVKSLDGAGGHLPVL
PTIPPPGVMPKSRIAPVTMGMVNMVKTRDPRLAKQQAAAQLGGPPSTVTAGMNNHNAALG
AMAIPPPAMTSGLMEASHHGATSAKQSSALARDNFGAKNRRPEASGVESTRSESSTQGEG
GSSSSARGKKHTPSSTASISSASSHRSRHDNDAKVRKDRKEHSSSSSSTSSSRSSTKGGS
KTGSSARSGSNSGSDKRKQRTQSNSDGGSPHGRKSPHSPGKKKSSSSEKSSSSGHSQNDN
SPKAGGKSRPESKSSSEMHALSGKQPSAQLARNNNVESKKHQHPAGEAAAFEDRDVDLRY
GVPQKRIKIDEPVADGLSVAKEADEMVVTMVGQKSSEVQSKSDIHIFLLFSTPTGMSVLM
FDKLYSSLQTVVALFGSAMRERSGEGYNSATDDEEALSAMIAKDIDLRAIPLQLLTPKLV
PELESSLAGTKGDASGSRSSKMESPSKRSEELDDGDEFSSGKKRSSPINSDEPNAKKSKA
EMIDALFGNEDVDLRQLPIGGTLLMGDDARDVDFPKMENAVNMPRSPLSEKTNSNHGAKG
LEKDKLGRPLLYNKLPDDPIERRRSIVSLTKPGDIDHRFPQQSLHHHDAADEDDNSMDSM
NANIKTIIAQAQDQMEKGEITPEQYNILMKQVIQLNETQKIRQAQRIEHVKRQDQSVIRI
DDNGSMSGEDDVIVTSVTPATPGLSSMRLNDPKDSSSGIVNDFRGKIHPIDGKPPLVKPF
EGAPFAVIGIPPTSVPPPDIRAQRDPRRIRESKWNRVEPGPGPAWANRPVGPIVGGPMVV
APPLGGGIRPGLAVPSPWEQAPFPVMADGMSRFPAPPGPLPLGVLGGLAPNMLNPALPKL
NDSVRTINIDGIQREIRFYEEIAVIFMNWDEPKEIGFQKGARMVVVDDRETFELGFNEPY
KSVSIENKVYQMRLGAPTRELYIDDSWHECYFGDQPTTIMLDGKPRVFKIAGPAPQVKIG
DSRKDLVAGKINMIVDAKYMIPVFLDCKPQVFEVYGVMHRLQFADFLLTVLIDEQPFPVD
YGGLPMVVRSRDRDYYIRFTALPNLVVPGRVYIRDMIRTPLYRDLRTPPKDPSALEPPVP
LNPPFAPPTTAPPALPGAAGLGFGGINTLPPGAIGPRHPGLAGANATSTGLDYLTNLMPS
MAMQTGAAAGKNGPGYRIEADEKAAAAAGVGASAAAGSAPGSAHQPNASAAVGGLLANIN
VEELYKKIVAAGIITKLGAGTSSSPTPPQAAGGEAGAGTSAGGKDGKEDASKSKDKDKAP
IPEIEPVLLDKPETIKKRQAAVVHQLFSGMQCSSCGVRFPPEQTMKYSQHLDWHFRQNRR
DRDSARKAHSRKWYYDVSDWIQYEEIEDLEEREKNWFETQQTDQGELKKGGAGGGMGLGG
NDGDDFSSHDDAPQPSCPAGLDESDRQCHMCHDVFEHFYNEETEEWHLRNAILVDGSTYH
PLCYEDYKASLTMTETTLGNGTLGASLDESQKTDEAMDTSGAAGEAGEDGEAADGAGKYK
SKASKKGKLTSGEFDDDDVIVLPAVEPVVEEILDDDEQAAEKKEGDAVAAEQSSTVDEAK
SVAGSAKSPRPEFQERQIDEDLFIQEPNIEVTDLDTIEDKPPGESGEGASNGGQDPSSLS
SLLRVKIKQEPKEEDDADEEDALFEEVGTIESSLVEVAERSPAANNAAEEEPYEDVIAES
IPSPSESSNQMGIVAQPKATIDGNVDLQDAPQSATVVPNKIKINITKGKAQQQQQQQAAA
ASSNNDGEPGDGGSNGVNTNNFNEDSQGVEDEASNDGGGAGGSLEERDEKNGAEQSNNKE
SSTVATLPLAADAVAEVAFEETTDVAYELKEGLLGIELNRRPRVTSGLEASGLCSIM
NT seq
6294 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcggcggcgaatgccgagggccgggcgaagcagatcgagaaagaatacctg
tccagtctggccgacctgaatgtcaacagcaaaccgctgataaacatgctgacgatactg
gccgaggaaaacctcgagtatgcccaaatcatcgtgcacgcggtggaaaagcacctggca
aaggttgcaccagatgtaaaactgccaatactttacctcgttgattcaattgttaagaat
gtgggcaaacagtatcagacgctcttcagtcaggtcatagtgaatatgttctgcggagtg
tttcaaacggtcaatgaaaagattcgtgagaaaatgtttagcttgcgacagacgtggaac
gatgtgtttcaacagtccaagctgtacacgctggatgtaaagatcaactcgatcgatcca
ggatggccaatcactgcacaattgaaatcaaaaacaccaaccgcaattcacgtcaatcct
atgtttctcaaagcaaatggacctgagccaacgatcgcgatgcagcaacaattgagggat
aagcagcgtgagctgctcgagctgcaggcgcgaaagctggagctggagcttctcaccacc
aagaagcgaatcatggaacaggagaaacagttgagcatccaaacggagagtgtagcaaaa
gagccttcgctggaactggtcaaatcgttagatggagcgggaggtcatctaccagttctt
cctaccattccacccccgggcgtgatgccgaagagccgtattgctcccgttaccatgggc
atggtaaacatggtcaagacacgcgatcctcggttggcgaagcaacaggccgccgctcag
ctgggaggacctccgtcaaccgtgacagccggcatgaataatcacaacgcggcgctaggt
gcaatggcgatacctccgcccgctatgacttctggcttgatggaagcttcacatcacggt
gcgacttcggcgaaacaatcttccgctcttgcacgggacaatttcggtgcaaaaaatcgc
cgacccgaggctagtggtgtggaaagcaccagatcggaatcgtctacgcaaggtgaagga
ggtagcagcagcagtgcacgtggcaagaaacatacgccatcttccacagccagcattagt
tctgcttcttcgcacagatcgcggcacgataacgatgcaaaggtgcgaaaggaccgcaag
gaacactcttcatcctcatcgtctacaagcagtagtagatcgtcgaccaaaggcggtagc
aagacgggctcttccgcacggtccggcagcaacagcgggtccgacaagcggaaacaacgc
acccaaagtaacagtgacggtgggtcgccccatggtcgcaaatcacctcactcgcctgga
aagaagaaatcttcatcttcggagaaatcttcatcctctggtcattcgcaaaacgacaac
agcccaaaagcaggcgggaagtcgcgaccggaaagcaaaagctcttcggaaatgcatgcc
ctcagtggcaaacaaccatcggctcaacttgcgcgaaacaacaacgtcgaaagcaaaaag
catcagcatcctgccggcgaggcagcagccttcgaggaccgggacgttgacttgcgctac
ggcgttcctcagaaacggatcaagatcgatgagccggtggccgacggtctttcggtggcg
aaggaggcagacgaaatggttgtgacgatggtggggcaaaaatcgtcggaagtacaaagt
aagagcgacattcatattttcctattatttagtaccccaaccggtatgagtgtgttgatg
ttcgataaactatacagctcgttgcaaacggtagttgctctgttcgggagtgcaatgcgc
gaaaggtcgggggagggatataatagtgcaacagacgacgaagaagctctttcggccatg
attgctaaagatatcgatttacgagcaattcctctgcagttgctaacgccaaaactagtg
ccggagctcgagagttctctcgccggaaccaagggcgacgcgtccggttcgagatcgtcg
aagatggaatctccgtccaagcgatctgaagaactggacgatggagatgaattctcaagc
ggaaagaagcgaagcagtcccatcaactcggacgaaccgaacgctaagaagagcaaggca
gaaatgatagatgcattgttcggcaatgaagatgtcgatcttcgacagttgccgatcgga
ggcactctattgatgggtgatgacgcacgagatgtagattttccaaagatggaaaacgct
gtcaatatgcctagatctccactttcggagaaaaccaacagcaatcacggtgcaaaagga
cttgaaaaggacaagcttggcagacctctgttgtacaataaattaccagatgatcctatc
gagcgacgacgatccatcgtctcccttaccaaaccaggggacatcgatcatcggtttccg
cagcagagccttcatcatcacgacgcggcagatgaggacgacaattcgatggacagtatg
aacgccaacattaaaaccatcatcgcgcaggctcaggatcagatggaaaagggcgaaatt
acacccgagcagtataacatcctgatgaagcaggtgattcagctgaacgagacgcaaaag
attcgtcaggcgcagcgcatcgagcacgtgaagcggcaggatcagtcggtgattcggatc
gacgataatgggtcgatgagcggcgaagacgatgtgatcgtaacgtccgtgaccccggcg
acgcccggcctgtcgtcgatgcggctaaacgatccgaaggatagcagctccggcatcgta
aatgatttccgaggtaaaatacatccgattgacggaaagcctccactagtcaagcccttc
gaaggagcgccgttcgccgttatcggtattccgcccacgtccgttccgccacctgatatc
cgtgcccagcgagatccacgaagaatacgtgaatcgaaatggaatcgggtagagcctggt
ccaggccctgcttgggccaaccgtcccgttggtccgatcgttggtggaccgatggtggtg
gcacctccgttaggcggtggaattcgtcccggactggcggtaccaagcccgtgggagcag
gcaccgttcccagtaatggcggacggtatgtcccgattcccggccccacctggtccactg
ccgctgggcgtgctcggaggcttggctcccaacatgctgaatccggccctgcccaagctg
aacgacagcgtgcgtacgatcaatatcgatggcatccagcgggagattcggttctacgag
gaaatagccgtcatcttcatgaactgggacgagccgaaggagatcggtttccagaagggt
gcgcgcatggtggtggtcgatgatagggaaacgttcgagctgggttttaacgagccctac
aaatcggtcagcattgagaataaagtctatcagatgcgtttgggggcgccgacgagggag
ctttacatcgatgactcctggcatgagtgctacttcggcgaccagcccacgacgatcatg
ctggacggcaagccgagagtgttcaaaatcgcgggcccggcgccgcaggtgaagatcggc
gacagtcgcaaggatcttgtcgccggcaaaattaacatgatcgtcgacgcgaagtacatg
ataccggtgtttctcgactgcaaaccgcaagtgttcgaggtgtacggcgtgatgcatcgg
ctacagtttgcggactttctgctgacggtgctgatcgacgagcagcccttcccggtcgac
tacggtgggctgccgatggtggtgcgatcgcgtgaccgcgattactacatccggttcacc
gcgctgccgaacctggtggtgccggggcgggtctacatccgtgacatgatacgcacgccc
ctgtaccgggacctgcgcactccaccgaaagatcctagcgcgctcgagccaccggtgcca
cttaatccaccttttgctcctcccaccactgcaccgcccgcactgcccggagcggccggt
ttgggtttcggaggaatcaatacgctgccgccgggcgcaatcggccctcggcatccggga
ctggcgggcgcgaacgcaacctccaccgggctcgattacctcaccaatctgatgccctcg
atggccatgcaaacgggggcggcagcgggcaaaaatggtcccggctataggatagaagcg
gacgagaaggcagccgccgctgcaggagtgggagcttcagcagcggccggctctgcgccg
ggctctgcgcaccagccaaacgcgtccgccgccgtcggaggactgctggcgaacatcaat
gtggaagaattgtacaaaaagatagttgccgccggcattatcacgaagctcggggcgggc
acatcatcctcgccgacaccgccacaggctgcggggggtgaggcgggtgccggtacgtcc
gctggcggcaaggacgggaaagaggacgctagcaaatccaaagacaaggataaagcaccc
attccagagattgagccagtgctgctggacaagccggaaacgatcaagaagcgccaagcg
gccgtcgtacaccagctgttctcgggcatgcagtgcagcagttgcggcgtacggttcccg
cccgagcagacgatgaagtacagccagcatctcgactggcacttccggcagaatcggcgc
gatcgagactcggcccggaaggcgcactcgcgcaagtggtactacgacgtgtcggactgg
atccagtacgaggagatcgaggacctggaggagcgcgagaagaactggttcgagacgcag
cagaccgaccagggcgagcttaagaagggcggcgccggcggcggaatgggcctgggcggc
aacgacggggatgacttttcgtcgcacgacgatgcgccgcagccgagctgcccggccgga
ctggacgagagcgaccggcagtgccacatgtgccatgatgtgttcgaacacttctacaac
gaggaaacggaggagtggcatctgcgcaacgcgatcctggtcgatggcagcacgtaccat
ccgctgtgctacgaggactacaaggcgtcgctgacgatgaccgaaacgacgctgggcaat
gggacgctcggtgcgtcgttggatgagagccagaagactgatgaagccatggacacgagc
ggcgcggctggcgaggctggcgaggatggcgaagccgctgatggggcaggaaaatacaaa
tcaaaagctagcaaaaagggtaagctgacgagcggagagttcgatgacgacgatgtgatc
gtgttacctgccgtggagcccgtcgtggaggaaatcctcgacgatgatgagcaagcggct
gaaaagaaggaaggcgatgcggtggcggccgagcaatcctccacggtggacgaagcaaag
agcgtcgccggaagtgcaaaatccccgcggcccgagttccaggagcgtcaaatcgacgag
gacctgttcatacaggagcccaacattgaggtgacggatctggacacgatcgaggacaaa
ccgccgggtgagtcgggcgaaggggcgtccaatggcggccaggatccgagctcgctgtcg
tcgttgctgcgcgttaagatcaagcaggaaccgaaggaggaggacgatgccgacgaagag
gatgcactattcgaggaggtcggcacgatcgagtccagcctggtcgaagtggcggaacgt
tctccggccgccaacaatgctgctgaagaggagccgtacgaagacgttatcgctgaaagc
attccatcaccatcagaatcgtccaaccagatgggcattgtggcgcaaccaaaggcaacg
atcgatggcaacgtcgatctgcaggatgcgccacagtcggccacggttgtgccgaacaag
atcaaaatcaacatcacgaagggtaaggcccaacagcagcagcagcagcaggcggcagca
gcatcgtccaacaacgacggtgagcctggcgatggtggaagcaacggtgtaaatacgaat
aattttaatgaagatagccaaggggtcgaagacgaggcgagcaatgacggtggcggcgct
ggcggcagtttggaagagcgggacgagaagaacggtgccgaacagtccaataataaagaa
tcgtcgaccgtggcgacgctgccgttggcggccgatgcggtcgctgaggtcgcgttcgaa
gaaaccactgatgttgcgtatgagctgaaggaaggcctactgggcatcgagttaaacagg
cggccacgggtaacgagcggtctcgaagcgtccgggctctgctcgatcatgtaa
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integrated database retrieval system
