Agromyces archimandritae: G127AT_09445
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Entry
G127AT_09445 CDS
T08034
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aarc
Agromyces archimandritae
Pathway
aarc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aarc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G127AT_09445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aarc03400
]
G127AT_09445
Enzymes [BR:
aarc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G127AT_09445
DNA repair and recombination proteins [BR:
aarc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G127AT_09445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QTX03573
UniProt:
A0A975FJB9
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All DBs
Position
2072711..2075233
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AA seq
840 aa
AA seq
DB search
MAAVQGGPRLVDVDGRHLRLTNLDKVMYPETGTTKGEVISYYAEIAAVMLPHVAGRPVTQ
KRWVHGVGTADEPQQPFFEKAIEASAPEWVRRGVIHHSDGPKTYPVAGDRATLVWLAQQA
ALELHVPQWRFGPDGEPGTPDRLVLDLDPGEGMGLAECAEVARLARPILDGMGLDPVPVT
SGSKGIHLYARLDGSWTSAHVSEVAKELARALEADHPELIVSKMIRAIRAGRVFIDWSQN
NAKKTTIAPYSLRGRLRPTVAAPRTWRELASPKLRHLEFGEVLSRVDARGDPLAAVSAGA
GPLAPYLSMRTAGVTPEPMPSSPGAAGGGAPGFVIQEHHARRLHYDFRLERDGVLKSWAV
PKGIPADPAENHLAVEVEDHPLEYGSFEGTIPTGEYGAGTVHIWDSGTYDTEKWRDDEII
VTLHGRTGGPLGDARFALIRTSAGAKPQWLLHRTKEQPGAGAARSTRGGGASGKSGDTLG
LDAAGRRVGASPRRSGAGAGAASGGAGRGGRPAASTAGTRVPAVGHRPMLAKAATLAELR
GREWALEYKWDGIRALTRLAGGRVRAITRNGNDVTAAYPELAALAEVLDADGVVDGEIVA
VDAAGHPDFGLLQQRMNLARPGDVERVRRTVPVRYYLFDVLEIAGSEVTALPYTERRARL
EALVARTDGVIAVPQQAGGSPRAAFEEAARLGLEGIVAKNPASPYRDGQRSGEWLKIKRT
RTQEVVIGGYRPGRGGRSGRIGSLLVGIPGADGLEFAGRVGTGFSERELDRLGGLLEPLV
RGSSPFVQVPRAEASDAVWIEPRHVGEIEFSGWTRTGSARQPSWRGLRGDKSPDEVVRES
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgcaggggggcccgcgcctcgtcgacgtcgacggccggcacctcaggctg
acgaacctcgacaaggtgatgtaccccgagacgggaacgaccaagggggaggtgatctcc
tactacgcggagatcgccgccgtgatgctgccgcacgtcgccggccggccggtgacgcag
aagcgctgggtgcacggcgtcggcacggcggacgagccccagcagccgttcttcgagaag
gcgatcgaggcgtcggcgccggagtgggtgcggcgcggcgtgatccaccactcggacggg
ccgaagacgtacccggtcgccggcgatcgggcgacgctcgtgtggctggcgcagcaggcg
gcgctcgaactgcacgttccgcagtggcggttcgggccggacggcgagcccggcaccccg
gaccggctcgtgctcgacctcgacccgggggaggggatggggctcgccgaatgcgcggag
gtcgcgcgcctggcccggccgatcctcgacgggatggggctggacccggtgccggtcacg
agcggcagcaagggcatccacctgtacgcacggctcgacggctcgtggacgagcgcgcac
gtctcggaggtcgccaaggagctcgcccgcgccctcgaggccgaccatcccgagctcatc
gtgtcgaagatgatccgggcgatccgcgccggccgcgtgttcatcgactggagccagaac
aacgcgaagaagacgacgatcgccccgtactcgctgcgggggcggctgcggccgacggtc
gccgcgccgcgcacctggcgcgaactcgcctcgccgaagctcaggcatctcgagttcggc
gaggtgctttcgcgggtggatgcccggggcgatccgctcgccgccgtctcggccggtgcg
gggccgctcgcgccgtacctctcgatgcgcacggccggcgtcacaccggagccgatgccc
tcgtcgccgggcgcggccgggggcggggcgccgggtttcgtcatccaggagcatcacgcc
aggcgcctgcactacgacttccggctggagcgcgacggggtgctgaagagctgggcggtg
ccgaagggcatcccggccgaccccgccgagaaccacctcgccgtcgaggtcgaagaccac
cccctcgagtacggctccttcgagggcaccatcccgacgggcgagtacggggccggcacc
gtccacatctgggattcgggcacgtacgacaccgagaaatggcgcgacgacgagatcatc
gtcaccctgcacggccgcaccggggggccgctcggcgacgcccgcttcgcgctgatccgc
acgagcgcgggcgcgaagccgcagtggctgctgcaccgcacgaaggagcagcccggcgcg
ggggcggcgcggtcgacccgcggcggcggtgcgtcggggaaatcgggcgacacgctgggt
ttggatgccgcggggcggcgtgtcggggcgagcccccgacggagcggcgcgggcgcgggt
gctgcgtcgggcggcgccggccggggcgggcgccctgcggcatccactgcgggcacgcgc
gtgccggccgtcgggcaccggccgatgctcgcgaaagccgccacgctcgccgaactgcgc
gggcgcgagtgggcgctggagtacaagtgggacggcatccgcgccctcacccgcctcgcc
ggcgggcgggtgcgcgcgatcacacgcaacggcaacgacgtcacggcggcctacccggag
ctcgcggcgctcgccgaggtgctcgacgccgacggcgtcgtcgacggcgagatcgtcgcg
gtggatgccgcggggcaccccgatttcgggctcctgcagcagcgcatgaacctcgccagg
ccgggcgacgtcgagcgggtgcggcgcacggttccggtgcgctactacctcttcgacgtg
ctcgagatcgccggctccgaggtgacggcgctgccgtacacggagcggcgcgcacgcctc
gaggcgctcgtcgcccgcaccgacggggtgatcgcggtgccgcagcaggccggcggcagc
ccgcgcgccgcgttcgaggaggcggcccggctcggcctcgagggcatcgtcgcgaagaac
ccggcgtcgccgtaccgcgacgggcagcgttcgggggagtggctgaagatcaagcgcacg
cgcacacaggaggtcgtcatcggcgggtaccggccgggtcgcggtggacgatccgggcgc
atcggctcgctgctcgtcggcatccccggcgcggacgggctggagttcgccgggcgcgtg
ggcacggggttcagcgaacgggagctcgaccggctcggcgggctgctcgagccgctcgtg
cgcgggtcgagcccgttcgtccaggtgccgcgggccgaggcctccgacgcggtgtggatc
gagccccggcacgtcggcgagatcgagttctcggggtggacccgcaccggttcggccagg
cagccgtcgtggcgagggctgcgcggcgacaagtcgcccgacgaggtcgtgcgggagtcg
tga
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