Azospirillum argentinense: D3093_03505
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Entry
D3093_03505 CDS
T08628
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aare
Azospirillum argentinense
Pathway
aare03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aare00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3093_03505 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aare03400
]
D3093_03505 (mfd)
Enzymes [BR:
aare01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3093_03505 (mfd)
DNA repair and recombination proteins [BR:
aare03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D3093_03505 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
SecA_DEAD
UB2H
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QCN94405
UniProt:
A0A4D8PGN8
LinkDB
All DBs
Position
complement(715645..719271)
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AA seq
1208 aa
AA seq
DB search
MPSFESLQPGRSGRLLVGGAPAGHDARVLADLAKRAGSAGLFHVALDDTRAAQLAEALAF
FAPSLEVQVFPAWDCLPYDRVSPNGGIVAKRIDTLTRLLARKADAPPLVVLTTVNAMVQK
VPPRAAFRDAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIIDLFPPGT
DEPLRLDLFGDELEAVRSFDPMSQRTTDKRDGVDLKPMSEVFLDEAGIARFRSGYRELFG
AVTDDDPLYEAISAGRKYGGMEHWLPLFHETMESLLAYMPKAILSLDHQATEARDSRIAQ
VVDFHASRESMIVIEKRTGSPVYKPVPVGMMFLDAQAWDDLFAAHAVAQLQPFGTPPGIK
GTLDAGGRRGHDFAEERARPDVNVFEAVKDHIRALRADGRRVLVAGYSAGSRDRLMTVLG
DHGIPGLEPAESIEDVRRFDRNIVGMIVLGMEHGFTSADMAVITEQDILGDRLVRPAAKK
KRKAANFIAEYTALASGDLVVHMDHGIGRYDGLETLEVSGAPHDCLRLIYEGGDKLYVPV
ENIEVLTRYGSEDAHAQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKADPVY
TPEGVYQEFAARFPYPETDDQLKAIEEVFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFL
VAMSGQQVAVVVPTTLLARQHFKTFTTRFAGLPLRIVQLSRMVTAKEQTKVKQELTEGTA
DIVIGTHALLGKGVQFKQLGMVIVDEEQHFGVKQKERLKELRADVHVLTLTATPIPRTLQ
MALSGVRELSLIATPPVDRLAVRTFVLPYDPVVVREAILREHYRGGQTFYVCPRVEDLPK
VAERVRELVPEVKIVTAHGQMPASELEEVMTAFDEGKFEVLLATNIIESGIDIPNANTLI
VHRADMFGLAQLYQIRGRVGRSKVRGYAYLTYAPNKPLTGTAQQRLHVIETLDSLGAGFQ
LASHDMDIRGAGNLLGEEQSGHVKEVGVELYQHMLEEAVANARANMDGQVPSGAEDQPWT
PQINLGTPVLIPEEYVPDLTVRLSLYRRIAELVDRAEIDGFAAELIDRFGKLPGEVENLL
DVVTIKQLCRQAGVERVDAGPKGAVLTFRNNSYAEPAKLLTYISQQMSLMKLRPDHKLVY
TREWADEAQRVRGVNRLMSDLAQMAGGGAVPKGEAPPPPPPPPPPRPSALKAGSKFGRNI
PSRPFGRR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgcccagtttcgaatcgttgcagccgggacgctccggccgccttctggtcggcggcgcc
cccgctggccacgatgcccgcgtcctcgccgacctcgccaagcgggcggggagcgccgga
cttttccacgtcgcgctcgacgacacccgcgccgcccagctggcggaggcgctggccttc
ttcgcgccgtcgctggaggtgcaggtgttcccggcctgggactgcctgccctacgaccgg
gtgtcgcccaacggcggcatcgtggcgaagcgcatcgacacgctgacccgcctgctggcg
cgcaaggcggacgcgccgccgctggtcgtgctgaccaccgtcaacgccatggtgcagaag
gtgccgccccgcgccgccttccgcgacgcggtgttctcggcgaagctgcgcgaccggatc
gatctggagaagctgcagcgctatctggccggcaacggctacacccgcgcccagacggtg
cgcgagccgggcgagttcgccgtgcgcggcggcatcatagacctgttcccaccgggcacc
gacgagccgctgcgcctcgacctgttcggcgacgagctggaggcggtgcgcagcttcgac
cccatgtcgcagcgcaccaccgacaagcgcgacggcgtcgacctgaagccgatgtcggag
gtcttcctcgacgaggccggcatcgcccgcttccgctccggctaccgcgagctgttcggc
gccgtcaccgacgacgacccgctctacgaggcgatcagcgcggggcgcaagtacggcggc
atggagcactggctgccgctgttccacgagacgatggaatcgctgctggcctacatgccc
aaggccatcctgtcgctggaccatcaggcgacggaggcgcgcgattcgcgcatcgcgcag
gtggtggacttccacgcctcccgcgagagcatgatcgtcatcgagaagcggacgggctcg
ccggtctacaagccggtgccggtcggcatgatgttcctcgacgcccaggcctgggatgac
ctgttcgccgcccacgccgtggcacagctccagcccttcggcacgccgccgggcatcaag
ggcacgctggacgccggcgggcggcgcggccacgacttcgccgaggagcgggcgcgcccc
gacgtcaacgtcttcgaggcggtgaaggaccacatccgcgccctgcgggccgacgggcgg
cgcgtgctggtggccggctattccgcgggttcccgtgaccgtctgatgacggtgctgggc
gaccacggcattccggggctcgagccggcggagagcatcgaggacgtccgccgcttcgac
cgcaacatcgtcggcatgatcgtgctgggaatggagcacggcttcacctccgctgacatg
gccgtcatcaccgagcaggacatcctcggcgaccgcctcgtccgcccggcggcgaagaag
aagcgcaaggccgccaacttcatcgccgaatacacggcgctggcctccggcgacctcgtg
gtgcacatggaccacggcatcgggcgctacgacgggctggagacgctggaggtgtcgggc
gccccccacgactgcctgcggctgatctacgagggcggcgacaagctctacgtccccgtc
gagaacatcgaggtgctgacccgctacgggtctgaggacgcgcacgcgcagctcgacaag
ctgggcggggccggctggcagggccgcaaggcccgcgtcaagaagcgcctgaaggacatg
gccgaggcgctgctgaagatcgccgccgagcgcatgctgaagaaggccgacccggtctac
acgccggagggcgtctatcaggagttcgccgcccgcttcccctatccggagaccgacgac
cagctgaaggccatcgaggaggtcttcaccgatctcggctcgggccgtcccatggaccgg
ctggtctgcggcgacgtcggtttcggcaagacggaggtggcgctgcgcgccgccttcctc
gtcgccatgagcggccagcaggtcgccgtggtggtgccgacgacgctgctggcgcgccag
catttcaagaccttcaccacccgcttcgccgggctgccgctgcgcatcgtccagctctcc
cgcatggtcaccgccaaggagcagaccaaggtcaagcaggagctgaccgaaggcaccgcc
gacatcgtgatcggcacccacgcgctgctcggcaagggcgtgcagttcaagcagctcggc
atggtcatcgtcgacgaggagcagcatttcggcgtgaagcagaaggagcggctgaaggag
ctgcgcgccgacgtgcatgtcctgacgctgaccgccacgccgatcccgcgcacgttgcag
atggcgctgtccggcgtgcgcgagctgtcgctgatcgccaccccgccggtggaccgtctg
gcggtgcgcaccttcgtgctgccctacgacccggtggtggtgcgcgaggccatcctgcgc
gagcattaccggggcggccagaccttctatgtctgcccccgcgtcgaggacctgcccaag
gtcgccgagcgggtgcgcgagctggtgcccgaggtcaagatcgtcaccgcccacggccag
atgccggccagcgagctggaagaggtgatgaccgccttcgacgagggcaagttcgaggtg
ctgctcgccaccaacatcatcgagagcggcatcgacatccccaacgccaacacgctgatc
gtgcatcgggcggacatgttcggtctggcccagctctaccagatccgcgggcgcgtcggc
cggtcgaaggtgcgcggctacgcctacctcacctacgcgccgaacaagccgctgaccggc
acggcgcagcaacggctgcacgtcatcgagacgctggacagcctgggcgccggcttccag
ctggccagccatgacatggacatccgcggcgccggcaacctgctgggcgaggagcagtcg
ggccacgtcaaggaggtcggcgtcgaactgtaccagcacatgctggaggaggccgtcgcc
aacgcccgcgccaacatggacgggcaggtgccgagcggggcggaggaccagccctggacc
ccgcagatcaacttgggcaccccggtgctgattccggaggagtatgtccccgacctgacg
gtgcgcctgtcgctctaccgccgcatcgccgagctggtggaccgggcggagatcgacggt
ttcgcggcggagctgatcgaccgcttcggcaagctgccgggcgaggtggagaatctgctc
gacgtggtgaccatcaagcagctctgccggcaggcgggggtggagcgggtggacgccggg
ccgaagggcgccgtgctgaccttccgcaacaacagctacgccgagccagccaagctgctg
acctacatcagccagcagatgagcctgatgaagctgcggcccgaccacaagctggtctac
acccgcgaatgggccgacgaggcccagcgggtgcgcggcgtcaaccggctgatgagcgat
ctcgcccagatggccggtggcggcgccgtgccgaagggcgaggcgccaccgcctccgccg
ccccctccgccgccgcgccccagcgcgctgaaagccgggtccaagttcgggcggaacatc
ccctcgcgtcccttcgggcggcgctga
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